BAC Information

Click to search

BAC

Clone NameMSMg01-530K10
Chromosome18 (Build37)
Map Location 40,579,490 - 40,579,781
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneNr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416, LOC677182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530K10.T7 (MSMg01no530_k10.b1)MSMg01-530K10.TJ (MSMg01no530_k10.g1)
ACCAG599238AG599239
length775837
length of high quality
(start - end)		730 (46 - 775)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no530_k10.b1 PHD_FILE: MSMg01no530_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:03 2005CHROMAT_FILE: MSMg01no530_k10.g1 PHD_FILE: MSMg01no530_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGATGACTACTGAATGGCTGAGAAGAACCTGAAAAAATGT
TAAGCATCCTTAATCATCAGAGAAAAGCAAATCATAAAAACCCTGAGATT
CTACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGTGAGGATGTGGAGAAAGAGTAACACTCCTCTATTGTTGGTGG
GATTACAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGTATATAATACTACCGGAGGATCCTCCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CTCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCCAGGCAAA
TGGATGGACCTGGAGGGTATCATCCTGAGTGAGGTAACCCAATCAAAAAG
GATCTCACACAATATGTACTCACTGATAAATGGATATTAGCCCAGAAACT
TAGGATACCCAAGATATAAGATACAATTTTCTAAATGCATGAAACTTAAG
AAGAACGAAGACCAAAGTGTGGGCACTTTGCCCCTTCTTAGAAGTGGGAA
CAAATCACCAATGGAAGGAGTTACA

CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTAAGCCTCTGTTCTCACCAGAGGCC
TGTAGGAGGAGTCAGGAGATAGTCATTTTCATTTCAAAAGCATCAATTGC
CAAACTCTCATAGCAGAGACTGCTGCTGGGGAATGAGCTAAGGTGTGGCT
GTGGCTGTTGGTGCACACAAGGAACACAGGAGGAGACTCTCAGTCAGAGA
GTGCGCCCCATTTCTGTTATAATAAATAAGCATGCCATTCCAAATCTAAC
TGCAGTTCCCACATCCTCATATCCACTACCCTTTCTTTTCCCTTCCCTTC
CCTTCCCTTCCCTTACCTTACCTTACCTTACCTTACCTTACCTTATCTTA
CCTTAACATACCTGTAACTGCTCTTGTTTATCATCGTGTGTGTCTATATT
TTCTTTTTTTTTTGTCCATTTTTTTATTTTCTTTTTTTCCCTTTCTCTTA
GTTCCCTTTATTCAATATCTACCCTTCGTCAATCTTAACCTTTATTCTTT
CCTTTTTTGTTTCTTTATTGTAACACATTTTTCTTTCTGCATCATTTCTT
CATTGTTTTTTAATCTTCGCATCAAAGCTTTTTTTATTTTTATTCATTGC
GTATATTTTGCCATTATATCCTTCGTATTACTATCACATACTATACTCAT
TACTTAATTACAATAGATTTACTTTCATTCTAACACGTACTTACGCATGA
CTCTTCTTTAATCTGGATTTATTAATATTATATATTCTTGTTACTTTTTT
CTATTCTGTATTATTCTCATGTTTTGGGTTTTACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_k10.g1 MSMg01no530_k10.g1 CHROMAT_FILE:
MSMg01no530_k10.g1 PHD_FILE: MSMg01no530_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:03 2005
         (292 letters)



>mm_chr18_40579290_40579982
          Length = 693

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%), Gaps = 1/292 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaagcctctgttctcaccagaggcctgtaggaggagtcaggagatagtcattttcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaagcctctgttctcaccagaggcctgtaggaggagtcaggagatagtcattttcatt 260

                                                                       
Query: 61  tcaaaagcatcaattgccaaactctcatagcagagactgctgctggggaatgagctaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaaagcatcaattgccaaactctcatagcagagactgctgctggggaatgagctaagg 320

                                                                       
Query: 121 tgtggctgtggctgttggtgcacacaaggaacaca-ggaggagactctcagtcagagagt 179
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tgtggctgtggctgttggtgcacacaaggaacacaaggaggagactctcagtcagagagt 380

                                                                       
Query: 180 gcgccccatttctgttataataaataagcatgccattccaaatctaactgcagttcccac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgccccatttctgttataataaataagcatgccattccaaatctaactgcagttcccac 440

                                                               
Query: 240 atcctcatatccactaccctttcttttcccttcccttcccttcccttccctt 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcctcatatccactaccctttcttttcccttcccttcccttcccttccctt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space:   193572
Effective search space used:   193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |