Query= MSMg01no531_l16.b1 MSMg01no531_l16.b1 CHROMAT_FILE:
MSMg01no531_l16.b1 PHD_FILE: MSMg01no531_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:27 2005
(677 letters)
>mm_chr18_77338526_77339602
Length = 1077
Score = 1154 bits (597), Expect = 0.0
Identities = 600/601 (99%)
Strand = Plus / Minus
Query: 77 ttgttactccctgccccctttgcagttctagggatcaaattcagtttcaggcctcacaca 136
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1077 ttgttactccctgccccctttgcagctctagggatcaaattcagtttcaggcctcacaca 1018
Query: 137 tgctaggtgaggccctgaacactgagcccagttttcacaccctctctgaagtgccctgct 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 tgctaggtgaggccctgaacactgagcccagttttcacaccctctctgaagtgccctgct 958
Query: 197 atataaccgaggctgactttgaagtctccatacttctgcctcagcctcccaagtgataga 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 atataaccgaggctgactttgaagtctccatacttctgcctcagcctcccaagtgataga 898
Query: 257 tatgtgcactacgcccagcttccttttcttctttgttcctattaaaaacacttaactaca 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tatgtgcactacgcccagcttccttttcttctttgttcctattaaaaacacttaactaca 838
Query: 317 ttaacatactccctaaaggcatctcatttcttccctacaaatagaacacatggccacctc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ttaacatactccctaaaggcatctcatttcttccctacaaatagaacacatggccacctc 778
Query: 377 caaataaataatcacttattatcttatttaattaaactgtttgcttgaatttattcaaat 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 caaataaataatcacttattatcttatttaattaaactgtttgcttgaatttattcaaat 718
Query: 437 acttaaaacagtctattgtaatggatataacgagtcagcatatcactttataccagtttg 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 acttaaaacagtctattgtaatggatataacgagtcagcatatcactttataccagtttg 658
Query: 497 atcatactcaggagcttaccagtatatcctaatacaaaggacttaaggatatgaaaagaa 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 atcatactcaggagcttaccagtatatcctaatacaaaggacttaaggatatgaaaagaa 598
Query: 557 taaaacattattaactctgttatcgttgagattagcaagaattacaaaaccagtaataca 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 taaaacattattaactctgttatcgttgagattagcaagaattacaaaaccagtaataca 538
Query: 617 atgttcatgaagatgctggcaaaacaatacaatcatatgctgaagaatataaattggtgc 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgttcatgaagatgctggcaaaacaatacaatcatatgctgaagaatataaattggtgc 478
Query: 677 a 677
|
Sbjct: 477 a 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_l16.g1 MSMg01no531_l16.g1 CHROMAT_FILE:
MSMg01no531_l16.g1 PHD_FILE: MSMg01no531_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:27 2005
(588 letters)
>mm_chr18_77160301_77161288
Length = 988
Score = 1006 bits (520), Expect = 0.0
Identities = 581/626 (92%), Gaps = 40/626 (6%)
Strand = Plus / Plus
Query: 1 tgtgcacagtcctacctaactgtagagaacatagaacaagtggaaacatcttgtgattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tgtgcacagtcctacctaactgtagagaacatagaacaagtggaaacatcttgtgattct 221
Query: 61 ctgtgaaggcttcagctggccaccaccaggctaatgctgtctgacttgtatttctggctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ctgtgaaggcttcagctggccaccaccaggctaatgctgtctgacttgtatttctggctc 281
Query: 121 tgttcgcatgaaggcggcttcttcttcttcttcttcttctaattcttc------------ 168
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 282 tgttcgcatgaaggcggcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 341
Query: 169 ---------------ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 213
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttcttcttcttctaattcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 401
Query: 214 ttcttcctcctcctcctcctcctcct------------ttttctccttctcttcctcttc 261
|||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 402 ttcttcctcctcctcctcctcctcctcctcctcctcctttttctccttctcttcctcttc 461
Query: 262 ttcttcctcctcctctttctcctcctcttcctcctcttcttccctatatttttcttgcat 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttcttcctcctcctctttctcctcctcttcctcctcttcttccctatatttttcttgcat 521
Query: 322 gtttataatgaaacaagtatgcttttgccttctacatttggtggtagttggtatttcctt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gtttataatgaaacaagtatgcttttgccttctacatttggtggtagttggtatttcctt 581
Query: 382 ttatttatttgttttttagaatctctctttactgtttgaggatctcgtacatgcatataa 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttatttatttgttttttagaatctctctttactgtttgaggatctcgtacatgcatataa 641
Query: 442 tagtgtttctcctcatcaaggaggcttctttctgcagtaggtggttgattaaaacagaga 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tagtgtttctcctcatcaaggaggcttctttctgcagtaggtggttgattaaaacagaga 701
Query: 502 cccacagcaggtcaacatgccgagaaaaacgaaatggggcatcactctctaaatgggaca 561
|||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||
Sbjct: 702 cccacagcaggtcaacatgccgagaataacgaactggggcatcacgctctaaatgggaca 761
Query: 562 gctacatcacaacagaggggggggga 587
||||||||||||||| ||||||||||
Sbjct: 762 gctacatcacaacag-ggggggggga 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 164
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
