Query= MSMg01no532_b19.b1 MSMg01no532_b19.b1 CHROMAT_FILE:
MSMg01no532_b19.b1 PHD_FILE: MSMg01no532_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:57 2005
(706 letters)
>mm_chr18_22176779_22177886
Length = 1108
Score = 1290 bits (667), Expect = 0.0
Identities = 692/701 (98%), Gaps = 4/701 (0%)
Strand = Plus / Minus
Query: 5 gaattccaaagatgtgtcaatctaagtgttaaaacttctttgaaactttttgcagggaaa 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 gaattccaaagatgtgaaaatctaagtgttaaaacttctttgaaactttttgcagggaaa 845
Query: 65 aagatccataattcatgaagaaatagagatagcgagaggccaaacagttgctctccacga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 aagatccataattcatgaagaaatagagatagcgagaggccaaacagttgctctccacga 785
Query: 125 gaagtgcattgagctgagtaaggaaataaggataatgaacctagaaaggacgaactatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gaagtgcattgagctgagtaaggaaataaggataatgaacctagaaaggacgaactatga 725
Query: 185 agaaagactgaaaaagttgcagtaagctttgtcaaaataataatcatatttaatatgaga 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 724 agaaagactgaaaaagttgcagtaagctttgtcaaaataataatcatatttaatatgata 665
Query: 245 ttcataaaatcagatttccatatttaaattctattcttatgatggttcttatttttcctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttcataaaatcagatttccatatttaaattctattcttatgatggttcttatttttcctc 605
Query: 305 agaattttatcaaaaatatgtgatgccatatgatatttaatcaattttgtccagatgagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agaattttatcaaaaatatgtgatgccatatgatatttaatcaattttgtccagatgagt 545
Query: 365 ataattacaagttgctttcactctttatt--tctctgagtttattcttatttaataactg 422
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 544 ataattacaagttgctttcactctttatttctctctgagtttattcttatttaataactg 485
Query: 423 ggagttgttagctttttccacatatgtaaaccttctctctctccagtattaataatatct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggagttgttagctttttccacatatgtaaaccttctctctctccagtattaataatatct 425
Query: 483 cttgttaattctacacattgttagtgtttgtgagccctgtttaataatttacagttgtcc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cttgttaattctacacattgttagtgtttgtgagccctgtttaataatttacagttgtcc 365
Query: 543 tctaccagttttgagggaagaatttag-aagcagatattccatagaataccttatcatct 601
||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct: 364 tctaccagttttgagggaagaatttagaaag-agatattccatagaatcccttatcatct 306
Query: 602 attcacatctccctttttcagtgtcctcttgtgagttcacctcatgaattagggatgctc 661
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 305 attcacatctccctttttcagtgccctcttgtgagttcacctcatgaattagggatgctc 246
Query: 662 tcagtgaaaatgttccttggctcctctgtgatggcacttgc 702
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcagtgaaaatgttccttggctcctctgtgatggcacttgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1108
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1098
Effective search space: 764208
Effective search space used: 764208
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no532_b19.g1 MSMg01no532_b19.g1 CHROMAT_FILE:
MSMg01no532_b19.g1 PHD_FILE: MSMg01no532_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:57 2005
(675 letters)
>mm_chr18_22017473_22018551
Length = 1079
Score = 1232 bits (637), Expect = 0.0
Identities = 668/681 (98%), Gaps = 7/681 (1%)
Strand = Plus / Plus
Query: 1 actagggatgttaaaaggcacttttacttctaaatggataaattcttcacactgatgggt 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 actagggatgttaaaaggcacttttacttttaaatggataaattcttcacactgatgggt 260
Query: 61 ttgaagtacattagggaaattcccaagggcagagcctggggtatctgtgtgaggcctgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaagtacattagggaaattcccaagggcagagcctggggtatctgtgtgaggcctgaa 320
Query: 121 caagtaggagcattgctaagaaggtagtgggtggtctcaacctttggctcttacactcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagtaggagcattgctaagaaggtagtgggtggtctcaacctttggctcttacactcta 380
Query: 181 ctccaaacacagctcggatatccatgctcttgcttcccctccggactccagaaaaaaaat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ctccaaacacagctcggatatccatgctcttgcttcccctccggactccagaaaaaaa-t 439
Query: 241 cagtatctattttctctggagaaaagcacattaactgaagataggagagacaatgaacac 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 cagtatctattttctctggagaaaagcacattaactgaggataggagagacaatgaacac 499
Query: 301 aggtagcagaaacatggagatccagagaaaccaacaaaaagactgtgcatatcctggaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aggtagcagaaacatggagatccagagaaaccaacaaaaagactgtgcatatcctggaag 559
Query: 361 gaagaacaacagtgcatatcctggaagggcttcaactgtaaagagcacaaaacagaatat 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 560 gaagaacaacagtgcatatcctggaagggcttcaactgtaaagaccacaaaacagagtaa 619
Query: 421 cctgtgtgagtgtatgaggaaagaagcaactgaagtgggggaatgacgtcttcatgtgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cctgtgtgagtgtatgaggaaagaagcaactgaagtgggggaatgacgtcttcatgtgtg 679
Query: 481 cacacatacgtagcaatttttatttggtg-----aaaagagctgttacagaaagcaagtt 535
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 680 cacacatacgtagcaatttttatttggtgccaagaaaagagctgttacagaaagcaagtt 739
Query: 536 atactataaagccacagcactaaaa-catcacagtactggcatacagagtgatcaggtga 594
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 740 atactataaagccacagcactaaaaacatcacagtactggcatacagagtgatcaggtga 799
Query: 595 atagagttgaggacccagatatattacgcccaagaaactacagatacttgattttttgac 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atagagttgaggacccagatatattacgcccaagaaactacagatacttgattttttgac 859
Query: 655 aaagatgataaaagcataaac 675
||||| |||||||||||||||
Sbjct: 860 aaagacgataaaagcataaac 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1079
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1069
Effective search space: 710885
Effective search space used: 710885
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
