Query= MSMg01no532_d24.b1 MSMg01no532_d24.b1 CHROMAT_FILE:
MSMg01no532_d24.b1 PHD_FILE: MSMg01no532_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:07 2005
(614 letters)
>mm_chr18_66174983_66175996
Length = 1014
Score = 1122 bits (580), Expect = 0.0
Identities = 601/610 (98%), Gaps = 4/610 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtgtcatcttagcttgaccagttctggaagaacatattaacctccgcctgtga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgtcatcttagcttgaccagttctggaagaacatattaacctccgcctgtga 264
Query: 65 tttccagaaaaccattctaatttagcaagtaattatgggtcacatgcaggacaaagagct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttccagaaaaccattctaatttagcaagtaattatgggtcacatgcaggacaaagagct 324
Query: 125 ggataatcttggattacccacaggaagctttgtctccaaggcaaccccccaatggtgggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggataatcttggattacccacaggaagctttgtctccaaggcaaccccccaatggtgggg 384
Query: 185 ctgctaatgcaaaggccagtcggctaatgaactgggaaggataactggctttcccaccca 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgctaatgcaaaggccagtcggctaatgaactgggaaggataactggctttcccaccca 444
Query: 245 tcagagccaaggaaatggacacaacaattatacggctattgagtcatttggcgttggaga 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 tcagagccaaggaaatggacacaacaattatacggctattgagtcattcggcgttggaga 504
Query: 305 ataaatgcctccaaaagccagcagatgaaaaacatttaaggaatggagataattatcaac 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 ataaatgcctccaaaagccagcagaggaaaaacatttaaggaatggagataattatcaac 564
Query: 365 tgtgctgccaggccaggccgacatagctctacagagagctcaagccagggcaagctttac 424
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 565 tgcgctgccaggccaggccgacatagctctacagagagctcaaaccagggcaagctttac 624
Query: 425 aaattttgcctagtgtcttgttaaatctgtttgtttgtttgtttgtttgcttgcttattt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 aaattttgcctagtgtcttgttaaatctgtttgtttgtttgtttgtttgcttg----ttt 680
Query: 485 ttctttcaaaacattctctgacctactcacccacaatctggtttcctcagaggaacacct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctttcaaaacattctctgacctactcacccacaatctggtttcctcagaggaacacct 740
Query: 545 tgtttaccacctgagaagaggtggcccaagggacttaggagaaggagacagaaggggtat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtttaccacctgagaagaggtggcccaagggacttaggagaaggagacagaaggggtat 800
Query: 605 tgtccatcag 614
||||||||||
Sbjct: 801 tgtccatcag 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_d24.g1 MSMg01no532_d24.g1 CHROMAT_FILE:
MSMg01no532_d24.g1 PHD_FILE: MSMg01no532_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:07 2005
(588 letters)
>mm_chr18_66332564_66333550
Length = 987
Score = 1067 bits (552), Expect = 0.0
Identities = 579/588 (98%), Gaps = 1/588 (0%)
Strand = Plus / Minus
Query: 1 ttctgaactcttttctacaaacctgaggagaggctggggaaaggttgtaactaacgtgac 60
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 787 ttctgaactcttttctac-aacctgtggagaggctggggaaaggttgtaactaacgtgac 729
Query: 61 ctggtcatttactcggtgacacattactccagttttacagaatctctaagaacgatttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 ctggtcatttactcggtgacacattactccagttttacagaatctctaagaactatttta 669
Query: 121 gttagtgataggtaaattaattattcagccaaggatctactctcttctgctttatgattt 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 668 gttagtgataggtaaattaattattcagccaaggatctactctcttctgccttatgattt 609
Query: 181 ttaaggagtatttccactagttctttaagaactttgtatgtttgatcatattcaccctct 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttaaggagtatttccactcgttctttaagaactttgtatgtttgatcatattcaccctct 549
Query: 241 ctgccccagctctcttcagatccacccaacctttccttcccaccagactttgtgtcgttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctgccccagctctcttcagatccacccaacctttccttcccaccagactttgtgtcgttc 489
Query: 301 ttttcctcattaaggctgatttatgatgcataaactttcttggttatgtgaccttccact 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tttttctcattaaggctgatttatgatgcataaactttcttggttatgtgaccttccact 429
Query: 361 gaagtatggttgacttatcaaagaggaaaacagtccatttcttttctagcagctaacaat 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 428 gaagtatggttgacttatcaaagaggaaaacagaccatttcttttctagcagctaacaat 369
Query: 421 tgctactatctcttcagccagggaccggactttgtgccccctctccatggtgggattttg 480
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 368 tactactatctcttcagccaggggccggactttgtgccccctctccatggtgggattttg 309
Query: 481 tctggcttgggctcacatgggtcttctgcacgctgtcacaacccccgtgcattggtacag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tctggcttgggctcacatgggtcttctgcacgctgtcacaacccccgtgcattggtacag 249
Query: 541 gttgtgtctagaagatgccctgttttctcctaggaatttctcctcaaa 588
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gttgtgtctagaagatgccctgttttctcctaggaatttctcctcaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space: 564706
Effective search space used: 564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
