BAC Information

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BAC

Clone NameMSMg01-532O04
Chromosome18 (Build37)
Map Location 64,431,928 - 64,432,144
singlet/doubletsinglet
Overlap geneSt8sia3
Upstream gene9030411M15Rik, LOC627792, Txnl1, Wdr7, LOC629436, LOC667773
Downstream geneLOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480, Nedd4l, Alpk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532O04.T7 (MSMg01no532_o04.b1)MSMg01-532O04.TJ (MSMg01no532_o04.g1)
ACCAG600938AG600939
length856757
length of high quality
(start - end)		238 (50 - 287)578 (81 - 658)
definitionCHROMAT_FILE: MSMg01no532_o04.b1 PHD_FILE: MSMg01no532_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:56 2005CHROMAT_FILE: MSMg01no532_o04.g1 PHD_FILE: MSMg01no532_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGACGTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTCACGGTGGAAGTCATTAAGATTTGCTCAGTTTGTCATGA
AACATCCAAGTTATCCAGAGCCTTGAACACAATGGGTACAGATGCAAACA
CATACAAGCAAAGCTAGCCCAGAAGTATTCCTAACAAATTATTAAATTCA
ATTGGTACTAGGGCAACAGGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGG
GAGAGAGGGAAGGAGGGGAGAAAGGATGTTTTATATAGAGATATGTGTAA
TAATTTAAGTATGGGAGATATGTTAATTAATGTTATAAGAAAGAGTGTAT
TGGGAAAAATTTGTTATATTTTTTTCACATTTATTTTTTAGTATTGGTAG
TATTTTGTAAGTTATTAACTTTGAAGTGTTTATTTTTAAGCCTATCGTTT
CATTTATGATTCGTGTAATTTTTAAACCAGTTTTTATAATGCGTTTTATT
TATTATTTTTGCCTCTCTTCCTGACTATTGGATGTTTATTGTACCTGCTT
TATAATCCCATCCCATTTGATTTTTGTTGTTAACTTTTCTGTTTACAACC
CCGTTACTTTTATTTCCACATTTTTAATATTCGTGAATCGTACCCGTTAT
CTGTTTTATGAAATTCTCAGCACATCCGCCATTTAATCTACTTTCACATT
CTTACTATCGTTTATATGAATTGGGCTGTCAATATGGCCATTGTTCCGAC
CCGTTTTGTCTTTTCACTGGTGGATTATTCCCTCATTATATCCTATTTCT
CCCTCT

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAGCAACCCTGAGATTCCACCTCACATCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGAAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCATTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAACGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAA
TTTCCTAGACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACAC
TATGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_o04.b1 MSMg01no532_o04.b1 CHROMAT_FILE:
MSMg01no532_o04.b1 PHD_FILE: MSMg01no532_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:56 2005
         (238 letters)



>mm_chr18_64431810_64432447
          Length = 638

 Score =  352 bits (182), Expect = e-101
 Identities = 213/234 (91%), Gaps = 17/234 (7%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcacggtggaagtcattaagatttgctcagtttgtcatgaaacatccaagtta 64
           ||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 335 gaattcttcacgggggaagacattaagatttgctcagtttgttatgaaacatccaagtta 276

                                                                       
Query: 65  tccagagccttgaacacaatgggtacagatgcaaacacatacaagcaaagctagcccaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tccagagccttgaacacaatgggtacagatgcaaacacatacaagcaaagctagcccaga 216

                                                                       
Query: 125 agtattcctaacaaattattaaattcaattggtactagggcaacaggaagtgtgtgtgtg 184
           |||||||||                 ||||||||||||||||||||||||||||||||||
Sbjct: 215 agtattcct-----------------aattggtactagggcaacaggaagtgtgtgtgtg 173

                                                                 
Query: 185 tgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagag 238
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 172 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagag 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 19
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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