Query= MSMg01no533_a02.b1 MSMg01no533_a02.b1 CHROMAT_FILE:
MSMg01no533_a02.b1 PHD_FILE: MSMg01no533_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:06 2005
(674 letters)
>mm_chr18_31717122_31718195
Length = 1074
Score = 1216 bits (629), Expect = 0.0
Identities = 660/677 (97%), Gaps = 11/677 (1%)
Strand = Plus / Minus
Query: 8 gaattcagatctgatatcatctggacctggactttaatttgttgctctctctggctctta 67
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaattcagatctgaaaccatctggacctggactttaatttgttgctctctctggctctta 803
Query: 68 ggaaagtgtggtgggtttccaggtaggcagtgcttctgtttgtcaggggtgacagcaagg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ggaaagtgtggtgggtttccaggtaggcagtgcttctgtttgtcaggggtgacagcaagg 743
Query: 128 aatagagttgggttaggagaaagaggtaaaagaaagagctaagaggatcctgtccacacc 187
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 742 aatagagttgggttaggagaaagaggtaaaagaaagagctaagaggatcctgtctacacc 683
Query: 188 aagaggcacggtcccctggaaggctggaggtgttgtaagagga-----------aagtat 236
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 682 aagaggcacggtcccctggaaggctggaggtgttgtaagaggaaaggctcctataagtat 623
Query: 237 attgaagaaacacaaagaagaatctggagagacagggatgaaagggctatgggaacccta 296
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attgaagaaacacaaagaagagtctggagagacagggatgaaagggctatgggaacccta 563
Query: 297 agcctgaactaaaagttggagtggatagagttgaggtggaggaggggcacctgaaagcag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agcctgaactaaaagttggagtggatagagttgaggtggaggaggggcacctgaaagcag 503
Query: 357 gctgctactaggctgatggtgacagtagagagattgtaatggagaacaggaaagatagta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gctgctactaggctgatggtgacagtagagagattgtaatggagaacaggaaagatagta 443
Query: 417 tgaatcacctgcctgagtccctgttaggcatatcctccagggttaccaggtagaaagtat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgaatcacctgcctgagtccctgttaggcatatcctccagggttaccaggtagaaagtat 383
Query: 477 ttctaggattctgtggctgacaaaaaggaaggggaagggagggtcaagaggatccacagg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttctaggattctgtggctgacaaaaaggaaggggaagggagggtcaagaggatccacagg 323
Query: 537 aaggaggaaagctgcgtccttgaaagattctgtggaatatccagggttctggaaaaatgt 596
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 322 aaggaggaaagctgcgtccttgaaagattctgtggaatccccagggttctggaaaaatgt 263
Query: 597 gggaatattttagagattattgttccttatgaagagtttgtgtgcaactaatagtggggc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gggaatattttagagattattgttccttatgaagagtttgtgtgcaactaatagtggggc 203
Query: 657 tgaggctttgtatgtaa 673
|||||||||||||||||
Sbjct: 202 tgaggctttgtatgtaa 186
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_a02.g1 MSMg01no533_a02.g1 CHROMAT_FILE:
MSMg01no533_a02.g1 PHD_FILE: MSMg01no533_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:06 2005
(629 letters)
>mm_chr18_31550468_31551496
Length = 1029
Score = 1151 bits (595), Expect = 0.0
Identities = 614/629 (97%), Gaps = 14/629 (2%)
Strand = Plus / Plus
Query: 1 agggaaccggcctacttgcaagactactatggaaaatggcaagtattcactgaagaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggaaccggcctacttgcaagactactatggaaaatggcaagtattcactgaagaaaaa 260
Query: 61 aagccacaagcatagtcagtgaggtgtggccgtggaattagtttccagccagagagtaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagccacaagcatagtcagtgaggtgtggccgtggaattagtttccagccagagagtaag 320
Query: 121 ttcaatattataagttataagttcaatattataagttatactataaattcagtatctcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaatattataagttataagttcaatattataagttatactataaattcagtatctcct 380
Query: 181 tttagagattatgaagtcttccaattctacattctaaattctacattcttcacgttcacc 240
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tttagagattatgaagtcttccaattctacattct--------------tcacgttcacc 426
Query: 241 tgaatgtatagctttcaaactgtaagagaattttcacattacattttgaaaaatttggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgaatgtatagctttcaaactgtaagagaattttcacattacattttgaaaaatttggag 486
Query: 301 ttacaagataatgacttctggagtcctgttcagagaattaatcagaaatgagtgctttgg 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 487 ttacaagataatgacttctggagtcctgttcagagaagtaatcagaaatgagtgctttgg 546
Query: 361 gctttgtgaaagaaaaataaacgacctcgtgagacttcccgatcactgggtttctcagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gctttgtgaaagaaaaataaacgacctcgtgagacttcccgatcactgggtttctcagaa 606
Query: 421 ggaaaactaaaaattctcagtgtcatataacaacaagtatttatctttcgcttgtgttcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ggaaaactaaaaattctcagtgtcatataacaacaagtatttatctttcgcttgtgttcc 666
Query: 481 ttgtacatcaaggctcagcagtaacttttgtcacattgtcacttgactccaggcttagtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ttgtacatcaaggctcagcagtaacttttgtcacattgtcacttgactccaggcttagtg 726
Query: 541 cacctgacttcacaatgtggagttaatgatggagcagaaggctttacctgaagcatgctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 cacctgacttcacaatgtggagttaatgatggagcagaaggctttacctgaagcatgctg 786
Query: 601 ttctcacagcagagagagagatgcaataa 629
|||||||||||||||||||||||||||||
Sbjct: 787 ttctcacagcagagagagagatgcaataa 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
