Query= MSMg01no533_b19.b1 MSMg01no533_b19.b1 CHROMAT_FILE:
MSMg01no533_b19.b1 PHD_FILE: MSMg01no533_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:14 2005
(637 letters)
>mm_chr18_13508493_13509534
Length = 1042
Score = 1174 bits (607), Expect = 0.0
Identities = 629/639 (98%), Gaps = 7/639 (1%)
Strand = Plus / Plus
Query: 5 gaattcaggataaactccattgtgagaacataatcaggcacagagcttagtgatatttct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggataaactccattgtgagaacataatcaggcacagagcttagtgatatttct 264
Query: 65 aagctatggaaagtacccccaaccctggccttccacccctgttctccatctcgccaccca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagctatggaaagtacccccaaccctggccttccacccctgttctccatctcgccaccca 324
Query: 125 atgcccccctctttctctctgcagggtgttatgcagccccatctggtttt-aagctattt 183
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 325 atgcccccctctttctctctgcagggtgttatgcagccccatctggttttgaa-ctattt 383
Query: 184 tggcaagcacaaccttaagcttgaccctcttgccgccatcctggctataccactacaccc 243
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 tggcaagcacaaccttaaacttgaccctcctgccgccatcctggctataccactacaccc 443
Query: 244 agtttatgcggtgctggggattaaactcaggcttcattcatgctagactctgccaaccaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtttatgcggtgctggggattaaactcaggcttcattcatgctagactctgccaaccaa 503
Query: 304 gcgcatccccagacacctctctttagaaataaaatcctaccagcacatcaacacaccaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcgcatccccagacacctctctttagaaataaaatcctaccagcacatcaacacaccaag 563
Query: 364 tagataaaagggaaccatcctgtcccagtccctcactgtcctccatcatggtgacccctg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tagataaaagggaaccatcctgtcccagtccctcactgtcctccatcatggtgacccctg 623
Query: 424 agatctaggctgaaaagcactggctcctgggagatgtactgtgatctgtacaggagatct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agatctaggctgaaaagcactggctcctgggagatgtactgtgatctgtacaggagatct 683
Query: 484 gaagctctctctagggctccccactgactttgagtaaatcactgactgcttctgtttcat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaagctctctctagggctccccactgactttgagtaaatcactgactgcttctgtttcat 743
Query: 544 ctctaaaatagagggactgctcttcactgacggcttttacacatcaggactct-----ct 598
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 744 ctctaaaatagagggactgctcttcactgacggcttttacacatcagaactcttctctct 803
Query: 599 gtctctaaaatagactgctcttcagtcactactaaaatt 637
|||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtctctaaaatagactgctcttcagtcactactaaaatt 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1042
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1032
Effective search space: 647064
Effective search space used: 647064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_b19.g1 MSMg01no533_b19.g1 CHROMAT_FILE:
MSMg01no533_b19.g1 PHD_FILE: MSMg01no533_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:14 2005
(658 letters)
>mm_chr18_13683965_13685018
Length = 1054
Score = 1210 bits (626), Expect = 0.0
Identities = 649/658 (98%), Gaps = 4/658 (0%)
Strand = Plus / Minus
Query: 1 tatgtgacttctgcacgtcttagttctggctctggtaccaagagtgaaggatgcagatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tatgtgacttctgcacgtcttagttctggctctggtaccaagagtgaaggatgcagatga 646
Query: 61 tctgtgctctctggggactcttccaggattatcaccacagtattcaacacatacctgagg 120
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tctg---tctc-ggggactcttccaggattatcaccacagtattcaacacatacctgagg 590
Query: 121 tttgttttactatgtgatacacccctaagagccttcagcctggtactgaattggatcaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tttgttttactatgtgatacacccctaagagccttcagcctggtactgaattggatcaca 530
Query: 181 gagtcagtgctgtcttgacttccccggggctgatgaaacttggaagagttcaacattatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gagtcagtgctgtcttgacttccccggggctgatgaaacttggaagagttcaacattatc 470
Query: 241 agctgttgtttgtatgtcagtctggcctcactaactaaactactctctttcagagaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agctgttgtttgtatgtcagtctggcctcactaactaaactactctctttcagagaacaa 410
Query: 301 aaacctatggccccacttccttttgtatccctgacaggagtgatgaatatttattccatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaacctatggccccacttccttttgtatccctgacaggagtgatgaatatttattccatg 350
Query: 361 aatgagcacttggccttactgacctcctaggggaagtacaaagacggtaacaaggagtgc 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 349 aatgagcacttggccttactgacctcctaggggaagtacaaagatggtaacaaggagtgc 290
Query: 421 cacagtatccattcagtcaacatcagagaagtgcatccagtctttcccagtcattggatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cacagtatccattcagtcaacatcagagaagtgcatccagtctttcccagtcattggatt 230
Query: 481 cagccacaggctgaaaatagcttttaaaattgaacctgtactgaacactgaaactcattt 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 229 cagccacaggctgaaaatagcttttaaaattgcacctgtactgaacactgaaactcattt 170
Query: 541 ccctgcatctatgccctaaacaatacaagtatttacatagcttttgcattgtattaggta 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 169 ccctgcatctatgccctaaacaatacaagtatttacatagcatttgcattgtattaggta 110
Query: 601 ttcgaagtcatctagagacaactataagtatatgaagggtagaggtaggttgtatgca 658
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 109 ttcgaagtcatctagagacaaccataagtatatggagggtagaggtaggttgtatgca 52
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1054
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1044
Effective search space: 676512
Effective search space used: 676512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|