BAC Information

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BAC

Clone NameMSMg01-533B19
Chromosome18 (Build37)
Map Location 13,508,697 - 13,684,669
singlet/doubletdoublet
Overlap geneLOC665379
Upstream geneLama3, 2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354
Downstream geneLOC100040358, Zfp521, LOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533B19.T7 (MSMg01no533_b19.b1)MSMg01-533B19.TJ (MSMg01no533_b19.g1)
ACCAG601111AG601112
length734764
length of high quality
(start - end)
637 (54 - 690)658 (75 - 732)
definitionCHROMAT_FILE: MSMg01no533_b19.b1 PHD_FILE: MSMg01no533_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:14 2005CHROMAT_FILE: MSMg01no533_b19.g1 PHD_FILE: MSMg01no533_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,508,697 - 13,509,334)(13,684,016 - 13,684,669)
sequence
CCCTTATTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGGATAAACTCCATTGTGAGAACATAATCAGGCACAG
AGCTTAGTGATATTTCTAAGCTATGGAAAGTACCCCCAACCCTGGCCTTC
CACCCCTGTTCTCCATCTCGCCACCCAATGCCCCCCTCTTTCTCTCTGCA
GGGTGTTATGCAGCCCCATCTGGTTTTAAGCTATTTTGGCAAGCACAACC
TTAAGCTTGACCCTCTTGCCGCCATCCTGGCTATACCACTACACCCAGTT
TATGCGGTGCTGGGGATTAAACTCAGGCTTCATTCATGCTAGACTCTGCC
AACCAAGCGCATCCCCAGACACCTCTCTTTAGAAATAAAATCCTACCAGC
ACATCAACACACCAAGTAGATAAAAGGGAACCATCCTGTCCCAGTCCCTC
ACTGTCCTCCATCATGGTGACCCCTGAGATCTAGGCTGAAAAGCACTGGC
TCCTGGGAGATGTACTGTGATCTGTACAGGAGATCTGAAGCTCTCTCTAG
GGCTCCCCACTGACTTTGAGTAAATCACTGACTGCTTCTGTTTCATCTCT
AAAATAGAGGGACTGCTCTTCACTGACGGCTTTTACACATCAGGACTCTC
TGTCTCTAAAATAGACTGCTCTTCAGTCACTACTAAAATTGTAGCTTCCC
ACGTTAGGATTCAAGTGTGCTGGAAACTAAACTA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATGTGACTTCTGCACGTCTTAGTTC
TGGCTCTGGTACCAAGAGTGAAGGATGCAGATGATCTGTGCTCTCTGGGG
ACTCTTCCAGGATTATCACCACAGTATTCAACACATACCTGAGGTTTGTT
TTACTATGTGATACACCCCTAAGAGCCTTCAGCCTGGTACTGAATTGGAT
CACAGAGTCAGTGCTGTCTTGACTTCCCCGGGGCTGATGAAACTTGGAAG
AGTTCAACATTATCAGCTGTTGTTTGTATGTCAGTCTGGCCTCACTAACT
AAACTACTCTCTTTCAGAGAACAAAAACCTATGGCCCCACTTCCTTTTGT
ATCCCTGACAGGAGTGATGAATATTTATTCCATGAATGAGCACTTGGCCT
TACTGACCTCCTAGGGGAAGTACAAAGACGGTAACAAGGAGTGCCACAGT
ATCCATTCAGTCAACATCAGAGAAGTGCATCCAGTCTTTCCCAGTCATTG
GATTCAGCCACAGGCTGAAAATAGCTTTTAAAATTGAACCTGTACTGAAC
ACTGAAACTCATTTCCCTGCATCTATGCCCTAAACAATACAAGTATTTAC
ATAGCTTTTGCATTGTATTAGGTATTCGAAGTCATCTAGAGACAACTATA
AGTATATGAAGGGTAGAGGTAGGTTGTATGCAAATCCAACACCATCTTCT
AGAAAGGACTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_b19.b1 MSMg01no533_b19.b1 CHROMAT_FILE:
MSMg01no533_b19.b1 PHD_FILE: MSMg01no533_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:14 2005
         (637 letters)



>mm_chr18_13508493_13509534
          Length = 1042

 Score = 1174 bits (607), Expect = 0.0
 Identities = 629/639 (98%), Gaps = 7/639 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggataaactccattgtgagaacataatcaggcacagagcttagtgatatttct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggataaactccattgtgagaacataatcaggcacagagcttagtgatatttct 264

                                                                       
Query: 65  aagctatggaaagtacccccaaccctggccttccacccctgttctccatctcgccaccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagctatggaaagtacccccaaccctggccttccacccctgttctccatctcgccaccca 324

                                                                       
Query: 125 atgcccccctctttctctctgcagggtgttatgcagccccatctggtttt-aagctattt 183
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 325 atgcccccctctttctctctgcagggtgttatgcagccccatctggttttgaa-ctattt 383

                                                                       
Query: 184 tggcaagcacaaccttaagcttgaccctcttgccgccatcctggctataccactacaccc 243
           |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 tggcaagcacaaccttaaacttgaccctcctgccgccatcctggctataccactacaccc 443

                                                                       
Query: 244 agtttatgcggtgctggggattaaactcaggcttcattcatgctagactctgccaaccaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtttatgcggtgctggggattaaactcaggcttcattcatgctagactctgccaaccaa 503

                                                                       
Query: 304 gcgcatccccagacacctctctttagaaataaaatcctaccagcacatcaacacaccaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcgcatccccagacacctctctttagaaataaaatcctaccagcacatcaacacaccaag 563

                                                                       
Query: 364 tagataaaagggaaccatcctgtcccagtccctcactgtcctccatcatggtgacccctg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tagataaaagggaaccatcctgtcccagtccctcactgtcctccatcatggtgacccctg 623

                                                                       
Query: 424 agatctaggctgaaaagcactggctcctgggagatgtactgtgatctgtacaggagatct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agatctaggctgaaaagcactggctcctgggagatgtactgtgatctgtacaggagatct 683

                                                                       
Query: 484 gaagctctctctagggctccccactgactttgagtaaatcactgactgcttctgtttcat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaagctctctctagggctccccactgactttgagtaaatcactgactgcttctgtttcat 743

                                                                       
Query: 544 ctctaaaatagagggactgctcttcactgacggcttttacacatcaggactct-----ct 598
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||     ||
Sbjct: 744 ctctaaaatagagggactgctcttcactgacggcttttacacatcagaactcttctctct 803

                                                  
Query: 599 gtctctaaaatagactgctcttcagtcactactaaaatt 637
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtctctaaaatagactgctcttcagtcactactaaaatt 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1042
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1032
Effective search space:   647064
Effective search space used:   647064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no533_b19.g1 MSMg01no533_b19.g1 CHROMAT_FILE:
MSMg01no533_b19.g1 PHD_FILE: MSMg01no533_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:14 2005
         (658 letters)



>mm_chr18_13683965_13685018
          Length = 1054

 Score = 1210 bits (626), Expect = 0.0
 Identities = 649/658 (98%), Gaps = 4/658 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtgacttctgcacgtcttagttctggctctggtaccaagagtgaaggatgcagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tatgtgacttctgcacgtcttagttctggctctggtaccaagagtgaaggatgcagatga 646

                                                                       
Query: 61  tctgtgctctctggggactcttccaggattatcaccacagtattcaacacatacctgagg 120
           ||||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tctg---tctc-ggggactcttccaggattatcaccacagtattcaacacatacctgagg 590

                                                                       
Query: 121 tttgttttactatgtgatacacccctaagagccttcagcctggtactgaattggatcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tttgttttactatgtgatacacccctaagagccttcagcctggtactgaattggatcaca 530

                                                                       
Query: 181 gagtcagtgctgtcttgacttccccggggctgatgaaacttggaagagttcaacattatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gagtcagtgctgtcttgacttccccggggctgatgaaacttggaagagttcaacattatc 470

                                                                       
Query: 241 agctgttgtttgtatgtcagtctggcctcactaactaaactactctctttcagagaacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agctgttgtttgtatgtcagtctggcctcactaactaaactactctctttcagagaacaa 410

                                                                       
Query: 301 aaacctatggccccacttccttttgtatccctgacaggagtgatgaatatttattccatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaacctatggccccacttccttttgtatccctgacaggagtgatgaatatttattccatg 350

                                                                       
Query: 361 aatgagcacttggccttactgacctcctaggggaagtacaaagacggtaacaaggagtgc 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 349 aatgagcacttggccttactgacctcctaggggaagtacaaagatggtaacaaggagtgc 290

                                                                       
Query: 421 cacagtatccattcagtcaacatcagagaagtgcatccagtctttcccagtcattggatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cacagtatccattcagtcaacatcagagaagtgcatccagtctttcccagtcattggatt 230

                                                                       
Query: 481 cagccacaggctgaaaatagcttttaaaattgaacctgtactgaacactgaaactcattt 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 229 cagccacaggctgaaaatagcttttaaaattgcacctgtactgaacactgaaactcattt 170

                                                                       
Query: 541 ccctgcatctatgccctaaacaatacaagtatttacatagcttttgcattgtattaggta 600
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 169 ccctgcatctatgccctaaacaatacaagtatttacatagcatttgcattgtattaggta 110

                                                                     
Query: 601 ttcgaagtcatctagagacaactataagtatatgaagggtagaggtaggttgtatgca 658
           |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 109 ttcgaagtcatctagagacaaccataagtatatggagggtagaggtaggttgtatgca 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1054
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1044
Effective search space:   676512
Effective search space used:   676512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)