CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGATCTTTGATATTAACCCACTGAGACTCCACTAAAAAAACAAA
ACAAAACAAAACAAAAAAACAAACAAACAAACAAAAAATGCTTCACTTTC
TTAGACTCAACAGATGTGGAGCCTCCTCCCAACACAGCTTCCCTTCTCAA
AACATTCACCTTGCATTGTTTCTCCATCATAATAATACTTACCCAAATGC
AGATGCCAAGTTCTATTGTTTGTCTATTGGATTTCTTCCTCAGTACTATT
TGTTATTCAATACCGTCTTCATGAATCTTTGCGTTGTCTTTGACCCAAAG
CAGAAATTCAGCAAACTTGTGTTGAATGAATGAGTGAGTGTGCAAACATA
TCTTATTTTCTCTTTTGTCCCTGGGATAAAATACTCCAACAAAAGCAACT
TCAGTGAGAAGGGTTTGGTTTAGGTGCAGCTGATCATGATGGGGAAGTGG
CAAGATCTTGAAGCAGCTAGCGACTCTTCAGCCATGGTCAGAGGGGAGTC
TGTGAGCACACCGGATACTGATGCTCAGCTCCCTGTCTTTATGCAGTCTG
GAAGCCTCAGCCTACGGATCAGTCCTGCCTGCACTTAATATGTGTCTTTC
CACCCCAATTAATGCAGCCAAGGTAATCTTCCTCAGGCGTGTTCAGAGGC
CATCTCACAGCTAATCCTCGAGTC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATTATCTAAATGCCTTCCTACTCTGTC
TCTTTGTCTCTATCTCTCCTTTCCCCCTTTCCCTTCCTCCCCCCCTTCTC
CTTCCTCTTTTTCTTCTTGGAAACATTGGTCCTCATAGCTAAAAAGGTTG
TAGTGTGCCTGGGGAGGAAGAAGAATTACATACAAGGGGCAAAATATGAG
TGCCAGGTATGCTGCTTCTTCAACAAAATTTCCTAAAACCCCTTGCTATG
AACATCATGTCCCTCTCTCATTGGTCAGTTTGAACCACATGCTTTTAAGA
GTAGCTACAAGTCTGATCTTACTTTCATGTTCTGAAACTGATGCTAACTT
CTGGTTCTGTTTTATTTGAGCACTTACTCCATAGTGTTGTTGGCTTAATC
ACTGCACTGAATTCATTATCATGTAGAATTGCTCCTCTGACACTTGACAA
GAAGATATACCTTATTTTTCACCACAAATCTGCACATCTCTGTTCTCTAG
AATTCCTTTGCTAACTCCTTCAAAGACGGTATAATGGTTGATCCTGGTTG
TCATCGAGCCTGTGGAAGTATTTATCTAGAGTCAGCACACAGAATCTGAT
AGAGCTGTTGTCCATGGGAATCAGGCTCCATCTTGAATGGCAGCAGACCT
TGACAGTGCAATTCCCATGTT

Query= MSMg01no534_b06.b1 MSMg01no534_b06.b1 CHROMAT_FILE:
MSMg01no534_b06.b1 PHD_FILE: MSMg01no534_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:27 2005
         (621 letters)



>mm_chr18_52944715_52945735
          Length = 1021

 Score = 1162 bits (601), Expect = 0.0
 Identities = 615/623 (98%), Gaps = 7/623 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgatctttgatattaacccactgagactccactaaaaaaacaaaacaaaacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatgatctttgatattaacccactgagactccactaaaaaaacaaaacaaaacaa 265

                                                                       
Query: 65  aacaaaaaaacaaacaaacaaacaaaaaatgcttcactttcttagactcaacagatgtgg 124
           ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 266 aac-aaaaaacaaacaaacaaacaaaaaacgcttcactttcttagactcaacagatgtgg 324

                                                                       
Query: 125 agcctcctcccaacacagcttcccttctcaaaacattcaccttgcattgtttctccatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcctcctcccaacacagcttcccttctcaaaacattcaccttgcattgtttctccatca 384

                                                                       
Query: 185 taataatacttacccaaatgcagatgccaagttctattgtttgtctattggatttcttcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taataatacttacccaaatgcagatgccaagttctattgtttgtctattggatttcttcc 444

                                                                       
Query: 245 tcagtactatttgttattcaataccgtcttcatgaatctttgcgttgtctttgacccaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcagtactatttgttattcaataccgtcttcatgaatctttgcgttgtctttgacccaaa 504

                                                                       
Query: 305 gcagaaattcagcaaacttgtgttgaatgaatgagtgagtgtgcaaacatatcttatttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagaaattcagcaaacttgtgttgaatgaatgagtgagtgtgcaaacatatcttatttt 564

                                                                       
Query: 365 ctcttttgtccctgggataaaatactccaacaaaagcaacttcagtgagaagggtttggt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcttttgtccctgggataaaatactccaacaaaagcaacttcagtgagaagggtttggt 624

                                                                       
Query: 425 ttaggtgcagctgatcatgatggggaag------tggcaagatcttgaagcagctagcga 478
           ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||
Sbjct: 625 ttaggtgcagctgatcatgatggggaaggcacagtggcaagatcttgaagcagctagcga 684

                                                                       
Query: 479 ctcttcagccatggtcagaggggagtctgtgagcacaccggatactgatgctcagctccc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctcttcagccatggtcagaggggagtctgtgagcacaccggatactgatgctcagctccc 744

                                                                       
Query: 539 tgtctttatgcagtctggaagcctcagcctacggatcagtcctgcctgcacttaatatgt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtctttatgcagtctggaagcctcagcctacggatcagtcctgcctgcacttaatatgt 804

                                  
Query: 599 gtctttccaccccaattaatgca 621
           |||||||||||||||||||||||
Sbjct: 805 gtctttccaccccaattaatgca 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)