BAC Information

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BAC

Clone NameMSMg01-534I21
Chromosome18 (Build37)
Map Location 36,884,445 - 37,063,270
singlet/doubletdoublet
Overlap geneCd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2
Upstream gene1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik
Downstream geneEG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534I21.T7 (MSMg01no534_i21.b1)MSMg01-534I21.TJ (MSMg01no534_i21.g1)
ACCAG602212AG602213
length769771
length of high quality
(start - end)		592 (38 - 629)144 (65 - 208)
definitionCHROMAT_FILE: MSMg01no534_i21.b1 PHD_FILE: MSMg01no534_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:06 2005CHROMAT_FILE: MSMg01no534_i21.g1 PHD_FILE: MSMg01no534_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,884,445 - 36,885,032)(37,063,127 - 37,063,270)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTC
ATTTACCACTGAGCCTGACCTATGGCAGATACTTAGTAAAGATCTTAGTA
AAGAGTGAGTGGCCTGGACTCGTGGTTCAGGATGACTTCAACTGGGCATG
GAGGCACATCCCTTTAACCAGAGCATTTGGAGGTAGAGGCAGGCCGATCT
TGATCTTTATGAGTTTGAGGCCAGCCAAGGATACATAGCCAGACTGTCTC
AAAAACAAAACAAAACAAACAAAACCACAACAAAACCCAAACAAAAACAA
AACCAACAAACACATTGTTATTTTAAAAAATATTTATTTGTGAGCACAGA
TAGACAACTTTCAGGAGTGAGTTTTCCCCTTCCGTGTGGATCCTGAGGGT
TAAAATCAGGGGTCAAGTTTGCTGGCTTTTACCCACTGAACCATCTTGAC
TGCCTTTCTTTCCTTACATCGTGGATTAAGATTTTAATAAATTTAAAGCA
GAGGATTCGTTGACGAGGACCCTCAGAAACCAGGAGGATGCAAATGTTCC
TTAAACAAAGAGGCGATCTCCTAGGAGCAAAGCCAGAGTTCCTGACAAGG
CCACTGCTTGGGATGATGGAGCTCCGGCGGTGACTACGCCAGAGTTATAC
TTCTCCGAGTGGGATTCAGAGTCCAAAAAGGGATTTCCTTTTTGTGACAG
GTTCCCCACTTTGGGCAGCTCATCTGGGCTAGGGTTCCTATCCAGCCTGT
TTGTACTGAGATCCAGCAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCAGATGCTGGTTATTTTAAATGATGACTTTTTCTC
ATGTTTTTAATATTTATGGTTTCTCCCTAAGATAAACATATTATGCTGTG
GTAAAGACTGGTTAAATATAAACATGTTTTAACATTCTTTCATTCTGTCG
TTGTGAAATTTTACAGTATGAGTTCTCTAATGTTAGGGCATTCATCACTA
TACGATCTCATTTTTGGTNNNNNNNNTGNNNNNNGGGGGGGGGTGGGGGG
GGGGGGGGGGTGGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATNNTNTTTTNNNNNNNNANNNNNTNNNNNNNNTT
NTTNNNNNNNNTTNNTTTTNNNNNTTTTNNTTTTTTTNNTTTTTTTTNTA
TTTTTTTATTTTTTTTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_i21.b1 MSMg01no534_i21.b1 CHROMAT_FILE:
MSMg01no534_i21.b1 PHD_FILE: MSMg01no534_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:06 2005
         (592 letters)



>mm_chr18_36884241_36885232
          Length = 992

 Score = 1122 bits (580), Expect = 0.0
 Identities = 586/588 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcatttaccactgagcctgacctatggcagatacttagtaaagatcttagtaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcatttagcactgagcctgacctatggcagatacttagtaaagatcttagtaa 264

                                                                       
Query: 65  agagtgagtggcctggactcgtggttcaggatgacttcaactgggcatggaggcacatcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagtgagtggcctggactcgtggttcaggatgacttcaactgggcatggaggcacatcc 324

                                                                       
Query: 125 ctttaaccagagcatttggaggtagaggcaggccgatcttgatctttatgagtttgaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttaaccagagcatttggaggtagaggcaggccgatcttgatctttatgagtttgaggc 384

                                                                       
Query: 185 cagccaaggatacatagccagactgtctcaaaaacaaaacaaaacaaacaaaaccacaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagccaaggatacatagccagactgtctcaaaaacaaaacaaaacaaacaaaaccacaac 444

                                                                       
Query: 245 aaaacccaaacaaaaacaaaaccaacaaacacattgttattttaaaaaatatttatttgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaacccaaacaaaaacaaaaccaacaaacacattgttattttaaaaaatatttatttgt 504

                                                                       
Query: 305 gagcacagatagacaactttcaggagtgagttttccccttccgtgtggatcctgagggtt 364
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagcacagatggacaactttcaggagtgagttttccccttccgtgtggatcctgagggtt 564

                                                                       
Query: 365 aaaatcaggggtcaagtttgctggcttttacccactgaaccatcttgactgcctttcttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaatcaggggtcaagtttgctggcttttacccactgaaccatcttgactgcctttcttt 624

                                                                       
Query: 425 ccttacatcgtggattaagattttaataaatttaaagcagaggattcgttgacgaggacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccttacatcgtggattaagattttaataaatttaaagcagaggattcgttgacgaggacc 684

                                                                       
Query: 485 ctcagaaaccaggaggatgcaaatgttccttaaacaaagaggcgatctcctaggagcaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctcagaaaccaggaggatgcaaatgttccttaaacaaagaggcgatctcctaggagcaaa 744

                                                           
Query: 545 gccagagttcctgacaaggccactgcttgggatgatggagctccggcg 592
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gccagagttcctgacaaggccactgcttgggatgatggagctccggcg 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no534_i21.g1 MSMg01no534_i21.g1 CHROMAT_FILE:
MSMg01no534_i21.g1 PHD_FILE: MSMg01no534_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:06 2005
         (144 letters)



>mm_chr18_37062927_37063470
          Length = 544

 Score =  263 bits (136), Expect = 3e-75
 Identities = 142/144 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagatgctggttattttaaatgatgactttttctcatgtttttaatatttatggtttct 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 344 tcagatgctggttattttaaatgatgactttttttcatgtttttaatatttatggtttct 285

                                                                       
Query: 61  ccctaagataaacatattatgctgtggtaaagactggttaaatataaacatgttttaaca 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccctaaaataaacatattatgctgtggtaaagactggttaaatataaacatgttttaaca 225

                                   
Query: 121 ttctttcattctgtcgttgtgaaa 144
           ||||||||||||||||||||||||
Sbjct: 224 ttctttcattctgtcgttgtgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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