Query= MSMg01no535_a20.b1 MSMg01no535_a20.b1 CHROMAT_FILE:
MSMg01no535_a20.b1 PHD_FILE: MSMg01no535_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:45 2005
(692 letters)
>mm_chr18_89988144_89989238
Length = 1095
Score = 1313 bits (679), Expect = 0.0
Identities = 687/691 (99%), Gaps = 3/691 (0%)
Strand = Plus / Plus
Query: 5 gaattccatgaatttcatactctcgggagagacttttccaagtgtcaggaaatacttata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgaatttcatactctcgggagagacttttccaagtgtcaggaaatacttata 264
Query: 65 tttcacttaaagtagaaaatttcacattgtaaacatgcatcaaaatatcacattgctata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttcacttaaagtagaaaatttcacattgtaaacatgcatcaaaatatcacattgctata 324
Query: 125 acattaaatgtggctgcgtataagtgttcaactgaaaataaaatttgtagcatctacaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acattaaatgtggctgcgtataagtgttcaactgaaaataaaatttgtagcatctacaca 384
Query: 185 tattacgaagttaaaaataaggtgtaaaatgaatttcttgggcattcatataattggtct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattacgaagttaaaaataaggtgtaaaatgaatttcttgggcattcatataattggtct 444
Query: 245 ttaaaaaagctatgcaaaagcaaagtggatatgtcagggggatgcatttgatggttgctg 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaaaaaagctatgcaaaaccaaagtggatatgtcagggggatgcatttgatggttgctg 504
Query: 305 cagaagaaaagtagtagaatacaatcatgtccttcaatattcagggccttcagaaagtag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagaagaaaagtagtagaatacaatcatgtccttcaatattcagggccttcagaaagtag 564
Query: 365 acaaaaaggatgtgtgctacagagaacttgtgaaagaatcagttagaggacaattaggct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaaaaaggatgtgtgctacagagaacttgtgaaagaatcagttagaggacaattaggct 624
Query: 425 caagtctcaaaacatcaaattgcagctccagatcagaatctgaaggtaattttcccaact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caagtctcaaaacatcaaattgcagctccagatcagaatctgaaggtaattttcccaact 684
Query: 485 caaacagctaaatgtatagaggcgacccaattacgaggaagcagttttcacttgatttaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caaacagctaaatgtatagaggcgacccaattacgaggaagcagttttcacttgatttaa 744
Query: 545 tttatcccataacaagaagtagcaaactaagacattttggcccagacatgagaaaacagc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttatcccataacaagaagtagcaaactaagacattttggcccagacatgagaaaacagc 804
Query: 605 aatagaaaagaaga---tgctctcttagatatatgctaagatcagtataatatacagtct 661
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aatagaaaagaagaagatgctctcttagatatatgctaagatcagtataatatacagtct 864
Query: 662 gcagataatgaaaatcctactttttgttctc 692
|||||||||||||||||||||||||||||||
Sbjct: 865 gcagataatgaaaatcctactttttgttctc 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1095
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1085
Effective search space: 739970
Effective search space used: 739970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_a20.g1 MSMg01no535_a20.g1 CHROMAT_FILE:
MSMg01no535_a20.g1 PHD_FILE: MSMg01no535_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:45 2005
(623 letters)
>mm_chr18_90188159_90189181
Length = 1023
Score = 1189 bits (615), Expect = 0.0
Identities = 621/623 (99%)
Strand = Plus / Minus
Query: 1 cacctgtagctttctatttataaatacttagctagtgcttttcttggctgcagatgtagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 cacctgtagctttctatttataaatacttagctagtgcttttcttggctgcagatgtagg 764
Query: 61 gggatttaaattctgctcctttggcagattggagtggaattaaattggaggaagggaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gggatttaaattctgctcctttggcagattggagtggaattaaattggaggaagggaagc 704
Query: 121 tttttatttacattgcattctaaaatcagatccctcaatacagagaatgtagccaacttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tttttatttacattgcattctaaaatcagatccctcaatacagagaatgtagccaacttc 644
Query: 181 acacttcttatatcttagcactgtgagctcccttatttgtataagctcagaggcttttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 acacttcttatatcttagcactgtgagctcccttatttgtataagctcagaggcttttta 584
Query: 241 attcaaattaatcaccatgctcacattctgccacataggacaccaacaggccattgctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 attcaaattaatcaccatgctcacattctgccacataggacaccaacaggccattgctgg 524
Query: 301 atttggagtagcacttgaaaatcgcctaagtctctacaccttatacacctctaccaaact 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 523 atttggagtagcacttgaaaatcgcctaagtctctacaccttatacacctctaccacact 464
Query: 361 tccttggcctatttctttactgaactaatgttagtcctcatttgagtactaagatttata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tccttggcctatttctttactgaactaatgttagtcctcatttgagtactaagatttata 404
Query: 421 taattcggttccacagccatctcattcggagccagagccagagtcacagcagctagtcga 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 403 taattcggttccacagccatctcattcagagccagagccagagtcacagcagctagtcga 344
Query: 481 cacctgtccacgagcagtgccaccaccaggcaggaaatcatgctcctggaagccgggcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cacctgtccacgagcagtgccaccaccaggcaggaaatcatgctcctggaagccgggcaa 284
Query: 541 tgtggtaaccagatgggagccaagttctggatagtcatcagtgatgggcatagcatcaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgtggtaaccagatgggagccaagttctggatagtcatcagtgatgggcatagcatcaag 224
Query: 601 cccactggaacttatcatggaga 623
|||||||||||||||||||||||
Sbjct: 223 cccactggaacttatcatggaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
