Query= MSMg01no537_a17.b1 MSMg01no537_a17.b1 CHROMAT_FILE:
MSMg01no537_a17.b1 PHD_FILE: MSMg01no537_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:19 2005
(680 letters)
>mm_chr18_89472315_89473395
Length = 1081
Score = 1201 bits (621), Expect = 0.0
Identities = 672/709 (94%), Gaps = 33/709 (4%)
Strand = Plus / Minus
Query: 5 gaattctcattagtaaatgttaagataaagggacagaaag-------------------- 44
||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 gaattctcattagtaaatgttaagataaagggacagaaagtacacacacacacacacaca 946
Query: 45 ----tacacacacgcacacacacacacaca--------cacgcacacagacacacacaca 92
||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 945 cacatacacacacacacacacacacacacacacacacgcacgcacacagacacacacaca 886
Query: 93 cacatcaatagttttaactgcatacgtttgtcatcaatatcatgcccagatgttacctcc 152
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 885 cacatcaatagttttaactgcatacgtttgtcatcaatatcatgcccagatgctacctcc 826
Query: 153 ttacagccctttactaactgctctagctaacatttaggacatattgttatctcagatgtc 212
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 825 ttacagccctttactaactgctctagctaacatttaggacatactgttatctcagatgtc 766
Query: 213 ttcctatgtatttttgagtttagtgcacatacagccaacagacagtttgatcttccccct 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ttcctatgtatttttgagtttagtgcacatacagccaacagacagtttgatcttccccct 706
Query: 273 aggagagtgaaacccatggagactactatggaatcacagccttttattggatgacaacat 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aggagagtgaaacccatggagactactatggaatcacagccttttattggatgacaacat 646
Query: 333 ttggcacaagctagctcactgacttaacatttaaaaccacagaacacgttaaataaaaca 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttggcacaagctagctcactgacttaacatttaaaaccacagaacacgttaaataaaaca 586
Query: 393 aaaaattcaagctgagtgcctctattatcatcatctgatttcagatcaataaaccaaaaa 452
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 585 aaaaattcaagctgagtgcctctattatcatcatctcatttcagatcaataaaccaaaaa 526
Query: 453 tctcatagcaaaacaatatcccttaaagttaactacaacaaacaaaataccagaagcagc 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tctcatagcaaaacaatatcccttaaagttaactacaacaaacaaaataccagaagcagc 466
Query: 513 atgtatacgtggtgtgtccacttctgagatcctgatttttagcattcccttaatttctat 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atgtatacgtggtgtgtccacttctgagatcctgatttttagcattcccttaatttctat 406
Query: 573 gcactcctttaatttcttatcttttccaaagcccctctctaacatcgccttagcattgcc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gcactcctttaatttcttatcttttccaaagcccctctctaacatcgccttagcattgcc 346
Query: 633 tttattgaccaccaccccc-ccccgtctctgacttctccctccttttcc 680
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 345 tttattgaccaccacccccgccccgtctctgacttctccctccttttcc 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space: 717570
Effective search space used: 717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_a17.g1 MSMg01no537_a17.g1 CHROMAT_FILE:
MSMg01no537_a17.g1 PHD_FILE: MSMg01no537_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:19 2005
(653 letters)
>mm_chr18_89294964_89296016
Length = 1053
Score = 1247 bits (645), Expect = 0.0
Identities = 651/653 (99%)
Strand = Plus / Plus
Query: 1 ttggtgtttatatttcactgttgttgatttacttttaagccacttaaggtatttaaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggtgtttatatttcactgttgttgatttacttttaagccacttaaggtatttaaaact 260
Query: 61 cctagatttataatcatttatagtttcctattatctgtccctgttctttaattagaattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctagatttataatcatttatagtttcctattatctgtccctgttctttaattagaattc 320
Query: 121 atactacttgaatgtaaaatgccttgtgtgctttttttggtatgcacgttttatttcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atactacttgaatgtaaaatgccttgtgtgctttttttggtatgcacgttttatttcatg 380
Query: 181 ataaaatgatgtcttaaaatattttactcacttgatttgcagagagacaacacattattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaaatgatgtcttaaaatattttactcacttgatttgcagagagacaacacattattt 440
Query: 241 agcctataaatgtggtttattaaaatgataagtgataattacttattaaagaagttttaa 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 agcctataaatgtggtttattaaaataataagtgataattacttattaaagaagttttaa 500
Query: 301 gatataaacgtacagaaatcataagggttgttatccaaatgtttgggatataaaattact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatataaacgtacagaaatcataagggttgttatccaaatgtttgggatataaaattact 560
Query: 361 tgatgatcctctgttggaacaaatgaaattaccctcattctatatagccacccaaaatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatgatcctctgttggaacaaatgaaattaccctcattctatatagccacccaaaatcc 620
Query: 421 atatgccaaattacatttgatttctattatagactaattttggatagtctattttatagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatgccaaattacatttgatttctattatagactaattttggatagtctattttatagg 680
Query: 481 aaaaccaaggggaactgggttcaggctagagggggcagtgtgagcagaacatgattgccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaccaaggggaactgggttcaggctagagggggcagtgtgagcagaacatgattgccc 740
Query: 541 cttacctacacacctctttgtcataccaacacacacatctgaattcactcgatgggactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttacctacacacctctttgtcataccaacacacacatctgaattcactcgatgggactt 800
Query: 601 tttctttccttttattggcaaaattccttccaatccaatcacttaaattagtt 653
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttctttccttttactggcaaaattccttccaatccaatcacttaaattagtt 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
