Query= MSMg01no537_b20.b1 MSMg01no537_b20.b1 CHROMAT_FILE:
MSMg01no537_b20.b1 PHD_FILE: MSMg01no537_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:24 2005
(689 letters)
>mm_chr18_4421734_4422821
Length = 1088
Score = 1239 bits (641), Expect = 0.0
Identities = 675/687 (98%), Gaps = 5/687 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgaggtctcttttgaaaa-ccttataaacaggaggagggctttctatactgga 63
||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct: 205 gaattcatgaggtctcttttgaaaaaccttatgaacaggaggagggctttctata-tgga 263
Query: 64 agcagaaacaacccttgcctggctttccttttttggtgttgggaaatgaacccagagtgc 123
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 agcagaaacaacccttgcctggctttcctttttcagtgttgggaaatgaacccagagtgc 323
Query: 124 tgtgcacaagcatatgttctgcctttagctccatcgccagcccccagagctttcctttct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtgcacaagcatatgttctgcctttagctccatcgccagcccccagagctttcctttct 383
Query: 184 aatctatagtagtagtattttgcttccctcttctggtgactctctctaggaagctgaaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatctatagtagtagtattttgcttccctcttctggtgactctctctaggaagctgaaat 443
Query: 244 cacaaggactgtatctgttttacatggttgttcaaaattctgcattgtgcttgactctca 303
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 cacaaggactgtatctgttttacatggttgttcaaaattctgcattgtgtttgactctca 503
Query: 304 tagaacatgcaccaggaagat-ttttttcctcttttgccttgatatatttcatttttaaa 362
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tagaacatgcaccaggaagatcttttttcctcttttgccttgatatatttcatttttaaa 563
Query: 363 aaattgtggctttaattaaagccttggatgccttcaagaaagatgagaatggaaacgtga 422
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 aaattgtggctttaattaaagccttggatgccttcaagaaagatgagagtggaaacgtga 623
Query: 423 ggagagggagggagctcagtggctttcatttttttccctcctgggtctgctgaactattg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggagagggagggagctcagtggctttcatttttttccctcctgggtctgctgaactattg 683
Query: 483 gctgatgtgggagaacaaaaagctacatcccatcacaggatagcttatgaactattactg 542
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gctgatg--ggagaacaaaaagctacatcccatcacaggatagcttatgaactattactg 741
Query: 543 aagagtttgggtcactgactcttcttatgtactatgtaaagaagctaggacaaaaagata 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gagagtttgggtcactgactcttcttatgtactatgtaaagaagctaggacaaaaagata 801
Query: 603 atgagtttaagactcagttacaaaggaacaaacacagtatgtactcactgataagtggat 662
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 atgaatttaagactcagttacaaaggaacaaacacagtatgtactcactgataagtggat 861
Query: 663 attaacccaaaagttcagaatacccaa 689
|||||||||||||||||||||||||||
Sbjct: 862 attaacccaaaagttcagaatacccaa 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1088
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1078
Effective search space: 731962
Effective search space used: 731962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_b20.g1 MSMg01no537_b20.g1 CHROMAT_FILE:
MSMg01no537_b20.g1 PHD_FILE: MSMg01no537_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:24 2005
(578 letters)
>mm_chr18_4590202_4591181
Length = 980
Score = 714 bits (369), Expect = 0.0
Identities = 409/429 (95%), Gaps = 14/429 (3%)
Strand = Plus / Minus
Query: 1 tcttatcaggtgtgaggctaggcggggattcgaagaacccttgagccaacttttcctaaa 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcttatcaagtgtgaggctaggcggggattcgaagaacccttgagccaacttttcctaaa 365
Query: 61 tgagggattcaaatagccttttttaaaaaaggcgaggtggcacaatggtatgtctcgcca 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 364 tgagggattcaaatagcctttttttaaaaaggcgaggtggcacaatggtatgtctcgcca 305
Query: 121 aatagtctatgaagaagcccagggctaaactggactgcctggatgtggagtcctaactca 180
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aattgtttatgaagaagcccagggctaaactggactgcctggatgtggagtcctaactca 245
Query: 181 gga--ctagaagtcaaatattttttcagcttttctgctaaa---aacaacaacaacaaaa 235
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 244 ggactctagaagtcaaatattttttcagcttttctgctaaaaacaacaacaacaacaaaa 185
Query: 236 acaaacaaacaaaacaaaaacaaaataaaacaaaacaaaacaaccggatctttagcaata 295
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 184 acaaacaaacaaaacaaaaac-----aaaacaaaacaaaacaacccgatctttagcaata 130
Query: 296 gatagcaaaggagcaggaccaagtcacacatttgctgtacaaaaaggttggcctgcagaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gatagcaaaggagcaggaccaagtcacacatttgctgtacaaaaaggttggcctgcagaa 70
Query: 356 gggggtgagtggtcaaaggg----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 411
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 69 gggcgtgagtggtcaaaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 10
Query: 412 gttcattac 420
|||||||||
Sbjct: 9 gttcattac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 980
Length adjustment: 10
Effective length of query: 568
Effective length of database: 970
Effective search space: 550960
Effective search space used: 550960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
