Query= MSMg01no538_b19.b1 MSMg01no538_b19.b1 CHROMAT_FILE:
MSMg01no538_b19.b1 PHD_FILE: MSMg01no538_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:41 2005
(634 letters)
>mm_chr18_47068975_47070008
Length = 1034
Score = 1156 bits (598), Expect = 0.0
Identities = 625/636 (98%), Gaps = 4/636 (0%)
Strand = Plus / Plus
Query: 3 cggaattcaggactctttctttcttt----tagattcatttatttattatatgtaagtac 58
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 199 cggaattcaggactctttctttctttcttttagattcatttatttattatatgtaagtac 258
Query: 59 actgtgtctgtcttcagacagccgcagtagagggcgttagatctcgttctggatggacct 118
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 259 actgtgtctgtcttcagacagccgcagtagagggcgttagatctcattctggatggacct 318
Query: 119 tcggaagagcagtaagtgctcttaactgcttgagccattttgccaaccccacaggactca 178
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 319 tcggaagagcagtcagtgctcttaactgcttgagccattttgccagccccacaggactca 378
Query: 179 ttctacctactgcccaatccaccgacctttggagttagtctgctttcttgagacaagcct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttctacctactgcccaatccaccgacctttggagttagtctgctttcttgagacaagcct 438
Query: 239 ggtaaagccagggatacacagagaaactgtctcgaaaaacaaaacaaagcacaaaaacaa 298
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 ggtaaagccagggatacacagagaaactgtctcgaaaaccaaaacaaagcacaaaaacaa 498
Query: 299 aagaaaacaagacacgacaaactcgatagtactgtaggttgggaagctgcatctgagagt 358
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 499 aagaaaacaagacacgacaaactcgatagtattgtaggttgggacgctgcatctgagagt 558
Query: 359 ttttaattcacacatcttctcttggtcagaaatagatgatgtcaagtagtaaacagggtt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttttaattcacacatcttctcttggtcagaaatagatgatgtcaagtagtaaacagggtt 618
Query: 419 tctctgtgtagccctggctgacctggaactcactttgtagaccaggctggcctcgaactc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tctctgtgtagccctggctgacctggaactcactttgtagaccaggctggcctcgaactc 678
Query: 479 agaaatccgcctgcctctgcctcccaagtgctgggattaaagtggtgcgccaccaccacc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agaaatccgcctgcctctgcctcccaagtgctgggattaaagtggtgcgccaccaccacc 738
Query: 539 cagcctaagaatagtttttaggtttgtatttgtattgaaagtaattatttgtctttagag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cagcctaagaatagtttttaggtttgtatttgtattgaaagtaattatttgtctttagag 798
Query: 599 atatttattttattttatatgtacatatatgcagtg 634
|||||||||||||||||||||||||||||||||||
Sbjct: 799 ttatttattttattttatatgtacatatatgcagtg 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_b19.g1 MSMg01no538_b19.g1 CHROMAT_FILE:
MSMg01no538_b19.g1 PHD_FILE: MSMg01no538_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:41 2005
(665 letters)
>mm_chr18_47200910_47201970
Length = 1061
Score = 911 bits (471), Expect = 0.0
Identities = 525/565 (92%), Gaps = 37/565 (6%)
Strand = Plus / Minus
Query: 1 acacaattacataagagaacctgagagaaatacatgctatcaggaatggagctgcaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 acacaattacataagagaacctgagagaaatacatgctatcaggaatggagctgcaaggg 480
Query: 61 ctctcagaaaagcacaaatgaaaaggacctcttgctccaagaaagcacagtaattggaat 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ctctcataaaagcacaaatgaaaaggacctcttgctccaagaaagcacagtaattggaat 420
Query: 121 gaaattctcaccagacaaacagagaacagagagagcagaagaagtaaaattaaagatgtg 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 419 gaaattctcaccagacaaacagagaacagagagagc---agaagtaaaattaaagatgtg 363
Query: 181 tcgacaggaaagacccaaccctcctgcaaaggaaaaggctgatttaaaaatcagagctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcgacaggaaagacccaaccctcctgcaaaggaaaaggctgatttaaaaatcagagctct 303
Query: 241 gtgggacagacagtatgaaatggtctcgcatctgtgtggctggaagctgagcatgaacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 302 gtgggacagacagtatgaaatggtctcgcatctgtgtggctggaagctgagca-gaacag 244
Query: 301 aggaggagggggagggaaaacactaaggcagggcactgaaa-----------gctggtag 349
||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 243 aggaggagggggagggaaaacgctaaggcagggcactgaaagcattctccaggctggtag 184
Query: 350 aagacagagttcagcccaagtagtcagactactgaacacttcctcagatctgtaaggcac 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 aagacagagttcagcccaagtagtcagactactgaacacttcctcagatctgtaagg--- 127
Query: 410 agctctggggtagcatgcacacagctctgcatctgataccagcactgccaaaggatccag 469
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 -------------------cacagctctgcatctgataccagcactgccaaaggatccag 86
Query: 470 gggggaaccttctaaaatgggggaaagtttctaaaatgacagctaaatccatgggcgtcg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 gggggaaccttctaaaatgggggaaagtttctaaaatgacagctaaatccatgggcgtcg 26
Query: 530 atgtaattgaaacagcataccagga 554
||||||||||| |||||||||||||
Sbjct: 25 atgtaattgaatcagcataccagga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1061
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1051
Effective search space: 688405
Effective search space used: 688405
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
