XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGATTCTGCAGCTGGCCACCAGTAGAGGGAGCACAAGATGTTTGCGTGGT
TCTGGTAGTGTGCTAAGTAAAATGGGTCACTAACATACTCTAACACAGAT
AGACATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGACAAANACACCCACCACCCCAACAACCAAAANAAAAA
CAACCCACACAACACCACAACCCCATAAAAAACACNCCCAAACCACCCAC
CAACACCCTTTTTTATCTNTTTTAAACCAAAATCTACATCATCTATATTC
TTTTCATTAAAAAACTCTTATCTCATCTAAACATATTATCCCCTTTACCC
CATCACACCAAAATAATTCTCATAATACCCCTCTCTCTCTTACTACTCTC
TTAAATCACTCTATTTTTCAACATATCTTTCTAATTTTTCACACCTACAT
AATTCTCTCATATCTTATTACCTCTTTTCTTTCTCATCTACTAACTTATC
TCTCCTCTATAAAACTACCAAACTACTCTCATTCTCAACCAAATTTTACT
TACAATCAACTCCCCCTCCTATACCTAAACCTCTTACCTTTTTATTTATA
CTCTCTCCCCTACAAATCTTTTTTACCCTTTATTCAATATATTTCACTTT
AATAATTCCTATTCTTTTTACCTCACATN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTAATTTTTTACTATTTTGAGAGGCATCAAAACTG
TTAGTATAACCTTGCCTTTTCTATAAACTCAGGCTAAGGTGTCTTCATAA
CCTGGCGCTTTTCCCTGCCTAATCTGTGGAAGTAAATTAATTTCAGATTT
GAGTGGACCCATGGGAATACTCCTACAATCTGAATTTGCTAAATTGGTGC
TACTGTGAGAAGATCATATTCATTTAATTAGCATTTCTTAACTACCTTCA
AATGCTCCTGAATATCCATTGGGAAGGAAAATTTAAATGATCTTTGTACT
TGCCTTTAAGGAACTCTTAGTCAAGCTAAGCAATGTATCCCCAGTGGGCC
AACAGAGCACTATAATTCTGAGAGTACCCAATAATCATCTAATGGTACTT
ATAGGTCACTCAATAGGAGAAAATTTATGTCTGGATCTGTAAACCTAAAC
AATCACCCATAGCTGATGAGGTCATGGGTGTTAAAGGACAACATATTGCT
GCCTATATACTGCCTAAACCACTCTAATTCCTAAATGTGTTCTACATACT
TAGACCTGCATGAAGGATAAGTGTAGCTCTCACCCTTCATCAAAGATGCT
TCTTTTAGTAACAAGTGAAGACCATTACAGAAAGCCATGATCAAAAATCT
GGGACAATAGACTATGGGGTGTCGAGCCTCAAACAN

Query= MSMg01no538_i05.b1 MSMg01no538_i05.b1 CHROMAT_FILE:
MSMg01no538_i05.b1 PHD_FILE: MSMg01no538_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:11 2005
         (178 letters)



>mm_chr18_52687086_52687663
          Length = 578

 Score =  226 bits (117), Expect = 5e-64
 Identities = 123/125 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgattctgcagctggccaccagtagagggagcacaagatgtttgcgtggtt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggaattctttgattctgcagctggccaccagtagagggagcacaagatgtttgcgtggtt 263

                                                                       
Query: 64  ctggtagtgtgctaagtaaaatgggtcactaacatactctaacacagatagacatatata 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 262 ctggtagtatgctaagtaaaatgggtcactaacatactctaacacagatagacatatatg 203

                
Query: 124 tatgt 128
           |||||
Sbjct: 202 tatgt 198


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no538_i05.g1 MSMg01no538_i05.g1 CHROMAT_FILE:
MSMg01no538_i05.g1 PHD_FILE: MSMg01no538_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:11 2005
         (623 letters)



>mm_chr18_52582448_52583470
          Length = 1023

 Score = 1141 bits (590), Expect = 0.0
 Identities = 614/622 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaattttttactattttgagaggcatcaaaactgttagtataaccttgccttttctata 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ttaattttttactattttgagaggcagcaaaactgttagtataaccttgccttttctata 260

                                                                       
Query: 61  aactcaggctaaggtgtcttcataacctggcgcttttccctgcctaatctgtggaagtaa 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 aactcaggctaaggtgtcttcataacctggtgcttttccctgcctaatctgtggaagtaa 320

                                                                       
Query: 121 attaatttcagatttgagtggacccatgggaatactcctacaatctgaatttgctaaatt 180
           ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 attaatttcagatttgagtggccccataggaatactcctacaatctgaatttgctaaatt 380

                                                                       
Query: 181 ggtgctactgtgagaagatcatattcatttaattagcatttcttaactaccttcaaatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgctactgtgagaagatcatattcatttaattagcatttcttaactaccttcaaatgc 440

                                                                       
Query: 241 tcctgaatatccattgggaaggaaaatttaaatgatctttgtacttgcctttaaggaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctgaatatccattgggaaggaaaatttaaatgatctttgtacttgcctttaaggaact 500

                                                                       
Query: 301 cttagtcaagctaagcaatgtatccccagtgggccaacagagcactataattctgagagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttagtcaagctaagcaatgtatccccagtgggccaacagagcactataattctgagagt 560

                                                                       
Query: 361 acccaataatcatctaatggtacttataggtcactcaataggagaaaatttatgtctgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acccaataatcatctaatggtacttataggtcactcaataggagaaaatttatgtctgga 620

                                                                       
Query: 421 tctgtaaacctaaacaatcacccatagctgatgaggtcatgggtgttaaaggacaacata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 tctgtaaacctaaacaatcacccatagctgatgaggtcatgggtgttaaaggacaaccta 680

                                                                       
Query: 481 ttgctgcctatatactgcctaaaccactctaattcctaaatgtgttctacatacttagac 540
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 681 ttgctgcctatatactgcctaaaccactctaattcctaaatgcgttctaaatacttagac 740

                                                                       
Query: 541 ctgcatgaaggataagtgtagctctcacccttcatcaaagatgcttcttttagtaacaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 ctgcatgaaggataagtgtagctctcacccttcatcaaagatgcttcttttggtaacaag 800

                                 
Query: 601 tgaagaccattacagaaagcca 622
           ||||||||||||||||||||||
Sbjct: 801 tgaagaccattacagaaagcca 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)