Query= MSMg01no538_i12.b1 MSMg01no538_i12.b1 CHROMAT_FILE:
MSMg01no538_i12.b1 PHD_FILE: MSMg01no538_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:12 2005
(656 letters)
>mm_chr18_68885560_68886615
Length = 1056
Score = 909 bits (470), Expect = 0.0
Identities = 500/510 (98%), Gaps = 5/510 (0%)
Strand = Plus / Minus
Query: 1 gtttgatgacgcagctccaaagtgttgagtagatctagacaccatagtctggtccagaat 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gtttgatgacgtagctccaaagtgttgagtagatctagacaccatagtctggtccagaat 460
Query: 61 tctttctcagttatgttgctttccatttagcattttttaagggaaccacccccaccccca 120
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 459 tctttctcagttatgttgctttccatttagcattctttaagggaaccaccaccaccccca 400
Query: 121 aattctaagcaaaccccattttaccctctgaccctttgttcaggaccaaatgctaccaca 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 399 aattctaagcaaaccccattttaccctctaaccctttgttcaggaccaaatgctaccaca 340
Query: 181 aggctgtttctctcctctgctcttgtttgcctgattccagtagtaggagaagttgtgttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aggctgtttctctcctctgctcttgtttgcctgattccagtagtaggagaagttgtgttg 280
Query: 241 actaaagaaaagatgctattcccttttcaagatctacttcaagatgtcaggtagactggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 actaaagaaaagatgctattcccttttcaagatctacttcaagatgtcaggtagactggt 220
Query: 301 aagcaactcagctgaaggttagagtttc-ctgtggtcacagaaagtgcgccagcctgcac 359
|||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 219 aagcaactcagctgaagg-tagag-ttctctgtggtcacagaaagtgcgccagcctgcac 162
Query: 360 tgtcctatgggaaccactggccatgtgtgactactgaagcacttgaaaacaaactgaatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tgtcctatgggaaccactggccatgtgtgactactgaagcacttgaaaacaaactgaatg 102
Query: 420 gatggaaggcattcattcataattttaagaaga-gttacttggcagaaagcagctattgg 478
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 101 gatggaaggcattcattcataattttaagaa-atgttacttggcagaaagcagctattgg 43
Query: 479 ttatctgttacacggtgccctgcagctcta 508
||||| ||||||||||||||||||||||||
Sbjct: 42 ttatccgttacacggtgccctgcagctcta 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_i12.g1 MSMg01no538_i12.g1 CHROMAT_FILE:
MSMg01no538_i12.g1 PHD_FILE: MSMg01no538_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:12 2005
(608 letters)
>mm_chr18_68748897_68749905
Length = 1009
Score = 1093 bits (565), Expect = 0.0
Identities = 598/609 (98%), Gaps = 1/609 (0%)
Strand = Plus / Plus
Query: 1 tcacccaggcctgcttggttttggcttttaatatgggcactcaaaggtgaattttttt-c 59
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tcacccatgcctgcttggttttggcttttaatatgggcactcaaaggtgaatttttttcc 260
Query: 60 ccacggctgaaagcccagaccaaacagcgagtaaatattttctgcttttaaggatgaatg 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ccacggctgaaagcccaggccaaacagcgagtaaatattttctgcttttaaggatgattg 320
Query: 120 ggaatgatacaggaactagaccagagagctctgtgggagatgtcttcgaacattttctta 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ggaatgatacaggaactagaccagagagttctgtgggagatgtcttcgaacattttctta 380
Query: 180 gtcttggaagagaaagataggtgcatagaaggtactctcccacgaccttgtgttgtgacg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcttggaagagaaagataggtgcatagaaggtactctcccacgaccttgtgttgtgacg 440
Query: 240 agaacactttaaaagaggacattaaaaagcaaggactcatagtacctcagcagcctctga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacactttaaaagaggacattaaaaagcaaggactcatagtacctcagcagcctctga 500
Query: 300 cgagaagacgtcagtggctacggacctggctttatatggctttggtttcagagtccaaga 359
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 cgagaagacatcagtggctacggacctgactttatatggctttggtttcagagtccaaga 560
Query: 360 tgacggctacaaaaagaaaccagaagacaggaagcccagagttatcttttgtacaatgtg 419
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 tgactgctacaaaaagaaaccagaagacaggacgcccagagttatcttttgtacaatgtg 620
Query: 420 agtctttctgaaagaactttctaaaagttcccttaggttcctttgggtgcggtgagtttc 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtctttctggaagaactttctaaaagttcccttaggttcctttgggtgcggtgagtttc 680
Query: 480 cctgtttatctcccagtgtctcaatttcctctcatgtaaaaaggacagcataatgccaac 539
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 cctgtttatctcccagtgtctcaatttcctcttatgtaaaaaggacagcataatgccaac 740
Query: 540 atcgctctcagagaactgggaggataaatgggctgatggcaaatagtgccctagaagcct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcgctctcagagaactgggaggataaatgggctgatggcaaatagtgccctagaagcct 800
Query: 600 ccgataagc 608
|||||||||
Sbjct: 801 ccgataagc 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1009
Length adjustment: 10
Effective length of query: 598
Effective length of database: 999
Effective search space: 597402
Effective search space used: 597402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
