NAAGTCCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCC
GCGGAATTCCTGGAAACTATAAGTACACACTGTNGTCTGAAGTTAAGTTT
AAACCAAAAGGTGATAAAAGTCACATGACAACTGCACTGTCCCACTTCTG
GTAGCCAGTTTTAGGAAGAAAGCACTTCAACCTCTGACATTTGGACCTAG
GCAAGCTCACAGGTTTTGCTGGTCTCCCAAACCACTGATGAGTGAAGGCT
ATTGAATGGGAAACTCATGTGCCACTTGATCACTAGATCCATGTCACCTT
TATTCCACTCTCATAGGACAGAGGTAGCCAAGAGGACAGGAAAATCACAG
AAACTTTGACTACAGGACTCAAGCCCACTTAAAGAAGTTTAGCTTTTTGG
ATCTTCCCAGGAGCTGGCGCCTCCCCTTTCCTGGCCAGATACATGGGGTG
CCTTCTCTCCTGATGTGCTCTGTGCTGCAGGGCAGACCAGAGGGACAGCC
AGGAACATCTGGGACCCATATGCTGCTAACTTTCCTAATGCCTCTGAGAA
CGATGGAAGGGAGGGATTGGTCTTAATCCCCTGAATCCTGCAGCTCTGTT
TTTGGTCTCTGCAAAGTCTGATTGCCTCCTTTTCTCTCTGAGGTAGGATT
CAAGGGACCCAACAGCCTTGGATGTTAGATAGGGACTTCTCAGTTGGTTT
TGGAAGATCCTGCTGTCAGTCCTGCA

NNNAACCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTACTACATTCTAAAATTGT
AAATGTCACCCTCACACCCACAGGTAATTATGGCTACCACCCCTCATCAA
CGAAGTCTCTTTGAGCAGCATGTGGGTACCATCCCAGAGATCACAACTGG
ACACTGCAAAGATCCACAGATTTTCAGGAGCCCAGGCCAATGGGTACATC
TATATCACAGCTCTGATTCTATGACTTAGGGAACACAGTGGGAGAGGGGT
GGAAACATGACCAGAAATATGGCAACAACAGAGAGCACCATCACATGGAA
GGAGGAAGCTTTCACAGGGTCTTATCTCTAGAAAAACAACTACAGGCAAC
CAATAATGGAGCAGAGCTAACCTTGCCTTGAGCTAGGCTCCTTTATTGGC
TGTCCAATGCAGAGTGATCAGCCCAGAAACCAACCAAAACGATAAAAAAT
GCACATAGAAGTTTGTATCTGTGTATATGCATGCATATATATGTATATAT
GTGTGTGTATATATATGTGTATGTATNATATATGTGTGTATATATATATA
TGCACATATATATGTGCACATATGTATATGTATGTATGTGCGTATATCCA
TACAGATACTTCCCTATGCGTTTCCTTACTAGTTTGTCGGCGTGTTTTGG
GGTATTTCTCTTTTTTGTAAAGAATCATTA

Query= MSMg01no540_c06.b1 MSMg01no540_c06.b1 CHROMAT_FILE:
MSMg01no540_c06.b1 PHD_FILE: MSMg01no540_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:19 2005
         (680 letters)



>mm_chr18_5458585_5459665
          Length = 1081

 Score = 1220 bits (631), Expect = 0.0
 Identities = 664/675 (98%), Gaps = 3/675 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcctggaaactataagtacacactgtngtctgaagttaagtttaaaccaaaaggtg 67
           |||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 208 gaattcctggaaacaataagtacacactgt-gtctgaagttaagtttaacccaaaaggtg 266

                                                                       
Query: 68  ataaaagtcacatgacaactgcactgtcccacttctggtagccagttttaggaagaaagc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 267 ataaaagtcacatgacaactgcactgtcccacttctggtagccagttttaggaaggaagc 326

                                                                       
Query: 128 acttcaacctctgacatttggacctaggcaagctcacaggttttgctggtctcccaaacc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acttcaacctctgacatttggacctaggcaagctcacaggttttgctggtctcccaaacc 386

                                                                       
Query: 188 actgatgagtgaaggctattgaatgggaaactcatgtgccacttgatcactagatccatg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 actgatgagtgaaggctattgaatgggaaactcatgtgccacttgatcactagatccatg 446

                                                                       
Query: 248 tcacctttattccactctcataggacagaggtagccaagaggacaggaaaatcacagaaa 307
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcacctttattccactctcacaggacagaggtagccaagaggacaggaaaatcacagaaa 506

                                                                       
Query: 308 ctttgactacaggactcaagcccacttaaagaagtttagctttttggatcttcccaggag 367
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 507 ctttgactacaggactcaaacccacttaaagaagtttagctttttggatcttcccagggg 566

                                                                       
Query: 368 ctggcgcctcccctttcctggccagatacatggggtgccttctctcctgatgtgctctgt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctggcgcctcccctttcctggccagatacatggggtgccttctctcctgatgtgctctgt 626

                                                                       
Query: 428 gctgcagggcagaccagagggacagccaggaacatctgggacccatatgctgctaacttt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gctgcagggcagaccagagggacagccaggaacatctgggacccatatgctgctaacttt 686

                                                                       
Query: 488 cctaatgcctctgagaacgatggaagggagggattggtcttaatcccctgaatcctgcag 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cctaatgcctctgagaacgatggaagggagggattggtcttaatcccctgaatcctgcag 746

                                                                       
Query: 548 ctctgtttttggtctctgcaaagtctgattgcctccttttctctctgagg-taggattca 606
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 747 ctctgtttttggtctctgcaaagtctgattgcctccttttctctttgagggtaggattca 806

                                                                       
Query: 607 agggacccaacagccttggatgttagatagggacttctcagttggttttggaaga-tcct 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 807 agggacccaacagccttggatgttagatagggacttctcagttggttttggaagagttct 866

                          
Query: 666 gctgtcagtcctgca 680
           |||||||||||||||
Sbjct: 867 gctgtcagtcctgca 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space:   717570
Effective search space used:   717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)