NNNNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTCACTCAGTTGTGGCTACAAGGCAAGTGCTCCCTGCG
AGCTCTTTACAGACTCGCCTATCTCCCTCTCCCCTCTTTTATTTTCCATC
TAATTGTCTGCTTATTTGACTGTCTCTCAGGCTTGGTCTCCTTTAATTTA
TTTAACCAAGAAATTTTGCCTTTCTTTATTAAAAGGAAAGGAATTTCTAC
AACTCAGTTATATTCTTTCAAACCCCACTTTGCTGGGTGAAATGGGGCTA
TGTGTTAGGAGTCGGATGCCCACTTTGCAATAGTTTATATTAAATAGACT
TAAGATAAAATCCTGTAAGCCAAGGTGGTTAAATTAAAATCTTTGGCTAC
TGAGAACATTTCCAAATTCTTGGACCAATAATCATAAAAACCACTAGAGA
CTTTGTAAATTATAGCTTTCAGAGGTCTTTCCTTTATACACCCTGGAAAG
AGAATATGGATCCACACATTTAACACCTTAACACAATGTTCCCCAAATTT
AGAGGATCAAAGGAATTTGGATCTGGAAATCTAGATCTGTTAATATAGTG
CTTTCTTGGAATTCAGGCAGTGTCAGTATGATATCAATGAGATGCGGTGG
TACCTTTAATTCCGGTGCCTAGGCCTTGAAGGCAGGAGGGTTAGAATTTC
TGGATGGTCATCANGTGCACAGTN

AAAAAAGGGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAAAGGC
TAAGAGCAAAAATTCAGGTGACAGCAGATGCTAGAGTGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTA
TGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCGAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGTAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTTGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCATAGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACA
ATTTGCTAAACACATGAAACTCAAGAA

Query= MSMg01no540_f04.b1 MSMg01no540_f04.b1 CHROMAT_FILE:
MSMg01no540_f04.b1 PHD_FILE: MSMg01no540_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:33 2005
         (611 letters)



>mm_chr18_29750845_29751855
          Length = 1011

 Score = 1160 bits (600), Expect = 0.0
 Identities = 606/608 (99%), Gaps = 2/608 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactcactcagttgtggctacaaggcaagtgctccctgcgagctctttacagact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gaattcactcactcagttgtggctacaaggcaagtgctccctgcgagctctttacagact 752

                                                                       
Query: 65  cgcctatctccc-tctcccctcttttattttccatctaattgtctgcttatttgactgtc 123
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 cgcctatctcccttc-cccctcttttattttccatctaattgtctgcttatttgactgtc 693

                                                                       
Query: 124 tctcaggcttggtctcctttaatttatttaaccaagaaattttgcctttctttattaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tctcaggcttggtctcctttaatttatttaaccaagaaattttgcctttctttattaaaa 633

                                                                       
Query: 184 ggaaaggaatttctacaactcagttatattctttcaaaccccactttgctgggtgaaatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggaaaggaatttctacaactcagttatattctttcaaaccccactttgctgggtgaaatg 573

                                                                       
Query: 244 gggctatgtgttaggagtcggatgcccactttgcaatagtttatattaaatagacttaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gggctatgtgttaggagtcggatgcccactttgcaatagtttatattaaatagacttaag 513

                                                                       
Query: 304 ataaaatcctgtaagccaaggtggttaaattaaaatctttggctactgagaacatttcca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ataaaatcctgtaagccaaggtggttaaattaaaatctttggctactgagaacatttcca 453

                                                                       
Query: 364 aattcttggaccaataatcataaaaaccactagagactttgtaaattatagctttcagag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aattcttggaccaataatcataaaaaccactagagactttgtaaattatagctttcagag 393

                                                                       
Query: 424 gtctttcctttatacaccctggaaagagaatatggatccacacatttaacaccttaacac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtctttcctttatacaccctggaaagagaatatggatccacacatttaacaccttaacac 333

                                                                       
Query: 484 aatgttccccaaatttagaggatcaaaggaatttggatctggaaatctagatctgttaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aatgttccccaaatttagaggatcaaaggaatttggatctggaaatctagatctgttaat 273

                                                                       
Query: 544 atagtgctttcttggaattcaggcagtgtcagtatgatatcaatgagatgcggtggtacc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atagtgctttcttggaattcaggcagtgtcagtatgatatcaatgagatgcggtggtacc 213

                   
Query: 604 tttaattc 611
           ||||||||
Sbjct: 212 tttaattc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)