NAAATACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTGGTCTTATTAATATTCATGGCTCTTCAGGTTTGTTTT
TTTTCCCATATAGCCTTCATTTTTTTCTGCATGAAGGTGTTTTGTCTGTA
TATGTCTGTGTATCACCAGGTGCATGTCTAGCCTTAGAAGCTAGACAAAG
TCATCCGATCACCTAGGACTAGAGCTATAACACTTGTGAGTCACACTGGG
AGGGGATCTGGAAGAGCAGACAATAATCTTAGCCGCTGAGCAAATCGGTC
CAGCTCTGAATGTCACATTTTTGCTGCCGTTCTCAGAAATGAGGACTAGA
GAAAACTAAGAGGAAATGCAGAGACACAAATGAAGAGGTCAGCCAAGAGG
GGTACAAGAAAGGGTTTTTTTCCCAAGGAGCAGGGGGTTGATGTACATTG
GGACCGAGCAAGTCCTTGGTGGTTTTGTTCTAAGTCCTTTTCAGAAATGA
ATGGACTCTGAAAGCCTGGAGAGATGGTGGGAACGTAACGTAATTGATGA
TCAGAACCTAGATGTTTAGATCTTACCATTTTGGGCAACATCAGGAAGAA
AGGACTTGGCAGAGGAAAAGGAAGTAGAGCCCAAGAAGTTCACGCCGATC
ATGTTAACAAGTGTGCTTCTAGTTTTTAAAATGTGATTTTCAGAACACCA
CTGTGTACATGGATCAGTTTATGTTGCCAAATAGCAA

ACATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAGAGCAAAAGTCAAGTCGTACCTTCT
CAGAGAGCTGAAAAGCCCTTCTTTCACCCTCCATTTGGCTTTATTGCTTC
CAAGGATATGAGAAGCACCATGTCCAAAGGTTCACACAGATATTTGTGGC
AGTGCTACCCACAACAGCCACGTTATGGGATAAACCTAGGTGTTCATATA
CAGGGGAATGGATAAAAGCAATAAATGTCACACATATGTGAATGTACACA
CACACACATTTTACTCATCCATGAAGAAGAATGAAATTGCATTGTTTGCA
GAAAATTGGATTCTACTGGAGATTATCAAATTAAGTGCATTAAATCATAC
TCAGGGAGACAAATATTATGTTCTCTTTCATCTACAAATCCTAGATTTTA
TATGGATATTTGAAATCATTTGATATATATTGTGCATATATATATTATAT
ATATATAATATATATATATATATATATATATATATAACATGAAACTAGAA
GTGAAAGTGCCTAGAGGAAGAAGGGGGACTGGTGGGTGGTAGGAAGGAAG
AAAAGGGGAAGGAAAGCGAAGCTTTGAGAGTGAATATGGTCAAAGTACAT
TATATACTTGGATGAAACTGCTGTTATGCAATCCAGTTCTATGTATAATG
AATATATGCAAATGAAAAAAATGTGGTTGTTTTAAAGTAGATAN

Query= MSMg01no540_g21.b1 MSMg01no540_g21.b1 CHROMAT_FILE:
MSMg01no540_g21.b1 PHD_FILE: MSMg01no540_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:42 2005
         (684 letters)



>mm_chr18_64270047_64271129
          Length = 1083

 Score = 1164 bits (602), Expect = 0.0
 Identities = 663/686 (96%), Gaps = 8/686 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggtcttattaatattcatggctcttcaggtttg----ttttttttcc--cat 58
           |||||||||||| ||||||||||||||||||||||||||||    ||||||||||  |||
Sbjct: 200 gaattcttggtcatattaatattcatggctcttcaggtttgttttttttttttcccacat 259

                                                                       
Query: 59  atagccttcatttttttctgcatgaaggtgttttgtctgtatatgtctgtgtatcaccag 118
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 260 atagccttcatttttttctgcatggaggtgttttgtctgtatatgtctgtgtatcaccag 319

                                                                       
Query: 119 gtgcatgtctagccttagaagctagacaaagtcatccgatcacctaggactagagctata 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgcatgtctagccttagaagctagacaaagtcatccgatcacctaggactagagctata 379

                                                                       
Query: 179 acacttgtgagtcacactgggaggggatctggaagagcagacaataatcttagccgctga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acacttgtgagtcacactgggaggggatctggaagagcagacaataatcttagccgctga 439

                                                                       
Query: 239 gcaaatcggtccagctctgaatgtcacatttttgctgccgttctcagaaatgaggactag 298
           ||  |||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||
Sbjct: 440 gc-catcggtccagctctgaatgtcacattcttgctgccggtctcagaaatgatgactag 498

                                                                       
Query: 299 agaaaactaagaggaaatgcagagacacaaatgaagaggtcagccaagaggggtacaaga 358
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 499 agaaaactaagaggaaatgcagagaaacaaatgaagagctcagccaagaggggtacaaga 558

                                                                       
Query: 359 aagggtttttttcccaaggagcagggggttgatgtacattgggaccgagcaagtccttgg 418
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagggttttttt-ccaaggagcagggggttgatgtacattgggaccgagcaagtccttgg 617

                                                                       
Query: 419 tggttttgttctaagtccttttcagaaatgaatggactctgaaagcctggagagatggtg 478
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 618 tggttttgttctaagtccttttcagaaatgaatggattctgaaagcctggagagatggtg 677

                                                                       
Query: 479 ggaacgtaacgtaattgatgatcagaacctagatgtttagatcttaccattttgggcaac 538
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 678 ggaatgtaacgtaattgatgatcagaacctagatgtttagatctgaccattttgggcaac 737

                                                                       
Query: 539 atcaggaagaaaggacttggcagaggaaaaggaagtagagcccaagaagttcacgccgat 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atcaggaagaaaggacttggcagaggaaaaggaagtagagcccaagaagttcacgccgat 797

                                                                       
Query: 599 catgttaacaagtgtgcttctagtttttaaaatgtgattttcagaacaccactgtgtaca 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 catgttaacaagtgtgcttctagtttttaaaatgtgattttcagaacaccactgtgtaca 857

                                     
Query: 659 tggatcagtttatgttgccaaatagc 684
            |||||||||| | ||| ||||||||
Sbjct: 858 cggatcagtttctattggcaaatagc 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1083
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1073
Effective search space:   723202
Effective search space used:   723202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)