NNCCACTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGAGGATCCG
CGGAATTCCAGGATTTTGGGAATTCACTTGACACAGCTTGAAGGAGAAAG
GCACTTATGAAGGCAGTAGTGGAGATGGGGAGGGCTGGCCAGCGGGATGT
GAAAAGCTCACATTAAGACTTAACTAGGGTAGTAAAAGGGTATGAAGAAC
AGTCATCTGGCCACAGTGCCTGGGAGGCGACATCACCTGAGTCTACCTAT
GAAAGCATGATAGCCCAGAGAGCCACCTCTCTGCCGTGAGGTTTTAGTTA
GCTCATCTATTACCTGGTTTCCTCATGACTTTAAAAAATAATACACCATT
AGTTTTGATTGCTATCACCCCACCCTCCACTTCTCCCCCATCCTCTCTGC
CTTCTAGAACACAAATTGGATATTGTTTTCATAATCCTATCTTTATGTTT
GAGTTGGACATTGAAAACCATTCATTTACCATTATTGAGGAAGATAAGCT
GACACGTGTAAATCTTTTCTGCTTCATTCAAATACTGTGTTCCTTTCTTC
TCACTTGTGCGTTTTTAGCTTTCTGGCTTACTGGACTTTCTTTAGATAGA
GTCTCAATTCTGCTAGACTATCTAGCCAACAGGCCACCAGGATCTTCTTA
CCTCTTCCTCCCCTCACCAGTGCTAGGATTACAGCTATGTAGCAACATAC
TCATCTGCTTGCTTTTCCTCATTTATCAGTT

TTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTTTTGGGTAGAGGGTA
TGGATGTTATTAGAAGATAAGGACATTGTGTTCGTTACTTTTCTTATTAA
TTGAAGGAGGAAGGGTTTATTTTGGCTCAAGGTTCAGGGTGACTGGAGCT
AAAAGCTTGACAGATGAGCTAGCTTCCTGCATCGCAGCAGGAACAAGAGG
TAGCATTCCTCACGTCATGATGGACCAGGTCAAGAATTCATCAACTTATC
ACAAACCTGAGGTTGTCTGGGAAGAAGAACCTCAATTGAGGAAAATGCCT
TCATCAGATTGCTTATAGGCACGTCTGTAGAGCATTTCTAAATTAACAAC
TGATGGGAGAGAGCCCAGCCCACTCTGGGTAGTGCCATCCCTGGGTTAGT
GGTCCTGGTGCTTTATGGAAGCAGGCTGGCTAAACCATGGGAGTAAGTCA
GTAAGCAGCATTCTTCCATAGCCCTATACTTCAGTTCCTGCCCCAGGTTC
CTGCCTTCCTTGAGTTCTTGCCTTAGACCTCTCTCAATGATAGACTATGA
TAGGGATGTATTCGCCAAACAAACCCTTTCCTCTCAGGATGCTTTCGGCC
ATGGTGTTTACCACAGCAATAGAAAGCAAACTAGGACAGCTCTGAAGCGT
TTGCCTGCTGTGAGGGACTCGGCTTTCAGCCAAA

Query= MSMg01no540_p06.b1 MSMg01no540_p06.b1 CHROMAT_FILE:
MSMg01no540_p06.b1 PHD_FILE: MSMg01no540_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:25 2005
         (622 letters)



>mm_chr18_49846126_49847147
          Length = 1022

 Score = 1156 bits (598), Expect = 0.0
 Identities = 616/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcacttgacacagcttgaaggagaaaggcacttatgaaggcagtagtggagatggggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcacttgacacagcttgaaggagaaaggcacttatgaaggcagtagtggagatggggag 260

                                                                       
Query: 61  ggctggccagcgggatgtgaaaagctcacattaagacttaactagggtagtaaaagggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctggccagcgggatgtgaaaagctcacattaagacttaactagggtagtaaaagggta 320

                                                                       
Query: 121 tgaagaacagtcatctggccacagtgcctgggaggcgacatcacctgagtctacctatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagaacagtcatctggccacagtgcctgggaggcgacatcacctgagtctacctatga 380

                                                                       
Query: 181 aagcatgatagcccagagagccacctctctgccgtgaggttttagttagctcatctatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 aagcatgatagcccagagagccacctctctgccgtgaggttttagttagcttatctatta 440

                                                                       
Query: 241 cctggtttcctcatgactttaaaaaataatacaccattagttttgattgctatcacccca 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctggtttcctcaagactttaaaaaataatacaccattagttttgattgctatcacccca 500

                                                                       
Query: 301 ccctccacttctcccccatcctctctgccttctagaacacaaattggatattgttttcat 360
           |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 ccctccacttctcctccatcctctctgccttctagaacaccaattggatattgttttcat 560

                                                                       
Query: 361 aatcctatctttatgtttgagttggacattgaaaaccattcatttaccattattgaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcctatctttatgtttgagttggacattgaaaaccattcatttaccattattgaggaa 620

                                                                       
Query: 421 gataagctgacacgtgtaaatcttttctgcttcattcaaatactgtgttcctttcttctc 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gataagctgacacatgtaaatcttttctgcttcattcaaatactgtgttcctttcttctc 680

                                                                       
Query: 481 acttgtgcgtttttagctttctggcttactggactttctttagatagagtctcaattctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttgtgcgtttttagctttctggcttactggactttctttagatagagtctcaattctg 740

                                                                       
Query: 541 ctagactatctagccaacaggccaccaggatcttcttacctcttcctcccctcaccagtg 600
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctagactatctagccaacacgccaccaggatcttcttacctcttcctcccctcaccagtg 800

                                 
Query: 601 ctaggattacagctatgtagca 622
           ||||||||||||||||||||||
Sbjct: 801 ctaggattacagctatgtagca 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)