NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACAAAGAGAAATCTCTACTGAAAAAAAAATCAAATTGAAGTTT
GGAAATAAAAATCTCAGTTAATCAAGTAAACTCAGCCGAGGACTCACCAC
CATGATGGATCAGGTGGAGGTTAGAAGGTCAGGGAAGGGAGAGGAAAGGA
GATAAATTAGGATAGTCAACACTGACCAAAAGTAAGATAAAAGAAAGTAT
GGCCGTATGAAATCTATAATATAGCATTAAAAGACTGAGTCTATAAATCA
TTGGGATAGAAGGAGGAGAGGAATTTAAGGCCAAACACAGAAACAGTCAG
TGAAATTATAGCAGAAGTCCCAAATTTAGCAAGATTATAGTCCAGACTCA
TGATGCTTTTTGATCATCAGACAAGGCTAGAAAGAAACCTCCCTAGATCA
TATTATAACACTAAAAACATTACACTCTAAACCTAGAGGAAAAAAAGAGA
TTGAAAGCTATGAGAGAGAAGCACTCAGTCACAGAGAGACAAAGCCTTCC
CAACCAACAGCACGTTTCTCAACAGAAACCCTAAAACCTAGGAGTGTATG
GTGCAATGTATCCCAAGCATAAAAATACAATGATTGCTTGCCTATATTAC
TACATCCAGCAACATGGTCTGTCATTCCTGAAGAAAGGAGAACTTTCCAC
AACAGAAAAAAACTAAAGGAATTCATGATCAGTATACTACAGAAGATATT
GGATGGGAACC

NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACATTTGGTCTTTATGACTT
TTACCATTTGTGGCTTAGACCTCTGAAGCAGATAGGTCATGTTGGAGTGC
AAAATGATCCCAACAAGATATTAGAGTTTGGAAGGTACAAATTTCCATCT
TATTAAACTGGAAGATTAATTAAAATATTATTTCACTCCTACTTTTCCTA
GCAGGAAAGAAAATTGTATGATACACAGGAAAGAATCATTAAAAATTAAC
ACTTTGAGGGACTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTC
TTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGTTGGCTCACAAC
CATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTATCTGAAAAGAGCAA
TGGTGTACTCATACATAAAATGAGAGAGAGAGAGGGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGNNNGNNNNNNTNNTNAGAAAGGGAAACTGNGN
AAAGGGGGGAAAGAAAAAAAGGTAATAGGAATGATTGGTTTGAGGGTATA
TGTGTATAATTTGGTATTGTTTTTATGATANTTGTTGATTTTGGGTGGGG
AATTATGATTTTTTGGTATTATGATATTTTTTGGTTGTATAATAGATCTT
C

Query= MSMg01no541_k11.g1 MSMg01no541_k11.g1 CHROMAT_FILE:
MSMg01no541_k11.g1 PHD_FILE: MSMg01no541_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:23 2005
         (493 letters)



>mm_chr18_54151964_54152856
          Length = 893

 Score =  775 bits (401), Expect = 0.0
 Identities = 422/429 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacatttggtctttatgacttttaccatttgtggcttagacctctgaagcagataggtc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 429 agacatttggtctttatgactttcaccatttgtggcttagacctctgaagcagataggtc 370

                                                                       
Query: 61  atgttggagtgcaaaatgatcccaacaagatattagagtttggaaggtacaaatttccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 369 atgttggagtgcaaaatgatcccaacaagatattagagtttggaaggtacaaatttccag 310

                                                                       
Query: 121 cttattaaactggaagattaattaaaatattatttcactcctacttttcctagcaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 309 cttattaaactggaagattaattaaaatattatttcactcctactttccctagcaggaaa 250

                                                                       
Query: 181 gaaaattgtatgatacacaggaaagaatcattaaaaattaacactttgagggactggaga 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gaaaattatatgatacacaggaaagaatcattaaaaattaacactttgagggactggaga 190

                                                                       
Query: 241 gatggctcagtggttaagagcactgactgctcttccagaggtcctgagttcaattcccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gatggctcagtggttaagagcactgactgctcttccagaggtcctgagttcaattcccag 130

                                                                       
Query: 301 caaccacatgttggctcacaaccatctgtaatgggatctgatgccctcttctggtgtatc 360
           |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 129 caaccacatgatggctcacaaccatctgtaatgtgatctgatgccctcttctggtgtatc 70

                                                                       
Query: 361 tgaaaagagcaatggtgtactcatacataaaatgagagagagagagggagagagagagag 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 69  tgaaaagagcaatggtgtactcatacataaaatgagagagagagagagagagagagagag 10

                    
Query: 421 agagagaga 429
           |||||||||
Sbjct: 9   agagagaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)