BAC Information

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BAC

Clone NameMSMg01-542A12
Chromosome18 (Build37)
Map Location 45,023,332 - 45,128,832
singlet/doubletdoublet
Overlap geneYthdc2
Upstream geneSpink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883
Downstream geneLOC626309, LOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542A12.T7 (MSMg01no542_a12.b1)MSMg01-542A12.TJ (MSMg01no542_a12.g1)
ACCAG607906AG607907
length769755
length of high quality
(start - end)		644 (47 - 690)554 (73 - 626)
definitionCHROMAT_FILE: MSMg01no542_a12.b1 PHD_FILE: MSMg01no542_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:55 2005CHROMAT_FILE: MSMg01no542_a12.g1 PHD_FILE: MSMg01no542_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,128,192 - 45,128,832)(45,023,332 - 45,023,885)
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGCCCATCTCATCTAGATCCAGAGACCATACTCTGACCCCAGG
CCCTGCTTCCTCTTTTGAACTAAAGGGTGAAGAAGAAAAAGGAGGAAAAG
ATGGAGGAAGAGGAGGAAGGAGGAGATCGGAGGGGAGGAAGATGGGAGGG
AGGAAGAGCAACAAGAACAGGAAGCAGGAAACAGGCCTTACTAAAGCACT
AAACATACAGGTGAGATCCATATCAACCCTTCATTCCCCAGCCCAACAGC
AGATAAGGCTATGTTTCATACAGATGTTATTTCAAATGGAATTCTTCATT
TAAATACCCTCAGTGGAAAGAAAGCTTAATTTATCCTCCTAGATAATTGT
AAGAAGATTAAAAGTAGATGCACTGACTTGAAATAAAGCCCCTGGGAACA
ATAAAATTTAAACAGAAATAAATTAACATTTAGTATCCTGCTAGATGTAA
CACAAGCTTGCTAGTTAACATGCTTGGTATGAACTGTTTCTGTTACAGTC
CTCCGCTCTCAGCATTTCAACTAACAAACCACAGCAAGGCACACCAAGAA
ATAAATGCATTAGGGCTCCTATGCTCAACAGACATGCTAACATCTCCCTT
TACAATGGGTTTTTAACATATAAAATACTTACTTAGTCTTCAAGACATTC
CTACAGAATGGCTATTATTATTTCCAGTTTAGGACAAACCAAATCAAACA
GAGAGTTTAGCAGTTTTTN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTTGCTTGCTGACTTGCTCTCCATGGC
TTGCTCAGCGTGCTTTCTTACACCATCCAGGACCACCTGCCAGGGAGGGC
ACTGCCCAGAGTGGACTGACCCTTGCCACATCAATCAGCAGTCAAGGAAA
TACCTCACAGACTTGTTTATAGGCCAGAGGCGGGTATTTTTTTAAGTGAG
GTTCCCTCTTCTTAGATGACTCTAGCTTGTCAGGTGGACAAAAAGCTAAC
GAACACATCAACTGATCAATGGCTTTACTGAAGAATGTGCATATAGAGCC
AGGTGTAAAAGCCATCCACCAATATCCCAAATGCTCAGGATGATAAACAA
GGGGATCCATAAAGCGACAGTTGGAATTACATATGATATCTTTTCCCAGT
AACTTAGATAGTTCATCTAGCCTGAACAGATACAAACTTTGCTCTGTTAG
TTTTATACTTCCACACTTGCCAGAATGGATAATATTAGTCTTAGAGATAG
ATATTGTTAAATTTGTGTGAGGCTACATTTTCTGTTGTCAAATGTCCATA
AATGTTAAAGTGCCTTTTGCGAAATAGAAAAGATTAGTGTGCTCTTTTTG
TCCACCTAGGTTTTGTTAGAGCACGAGGTGGTGGTGACATTCGAGATGTT
AATACAAACTCCGAGAACTGGGCTGTTGTTAAAGCTGCATTGGTAGCAGG
CATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_a12.b1 MSMg01no542_a12.b1 CHROMAT_FILE:
MSMg01no542_a12.b1 PHD_FILE: MSMg01no542_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:55 2005
         (644 letters)



>mm_chr18_45127809_45128852
          Length = 1044

 Score = 1178 bits (609), Expect = 0.0
 Identities = 633/641 (98%)
 Strand = Plus / Minus

                                                                        
Query: 4    ggaattcaagcccatctcatctagatccagagaccatactctgaccccaggccctgcttc 63
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 ggaattcaagcacatctcatctagatccagagaccatactctgaccccaggccctgcttc 965

                                                                        
Query: 64   ctcttttgaactaaagggtgaagaagaaaaaggaggaaaagatggaggaagaggaggaag 123
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 964  ctcttttgaactaaaaggtgaagaagaaaaaggaggaaaagatggaggaagaggaggagg 905

                                                                        
Query: 124  gaggagatcggaggggaggaagatgggagggaggaagagcaacaagaacaggaagcagga 183
            ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 904  gaggagagcggaggggaggaggatgggagggaggaagagcaacaagaacaggaagcagga 845

                                                                        
Query: 184  aacaggccttactaaagcactaaacatacaggtgagatccatatcaacccttcattcccc 243
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 844  aacaggccttactaaagcactaaacatacaggtgagatccatatcaccccttcattcccc 785

                                                                        
Query: 244  agcccaacagcagataaggctatgtttcatacagatgttatttcaaatggaattcttcat 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  agcccaacagcagataaggctatgtttcatacagatgttatttcaaatggaattcttcat 725

                                                                        
Query: 304  ttaaataccctcagtggaaagaaagcttaatttatcctcctagataattgtaagaagatt 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  ttaaataccctcagtggaaagaaagcttaatttatcctcctagataattgtaagaagatt 665

                                                                        
Query: 364  aaaagtagatgcactgacttgaaataaagcccctgggaacaataaaatttaaacagaaat 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 664  aaaagtagatgcactgacttgaaataaagcccctgggaacaataaaatttaaacaaaaat 605

                                                                        
Query: 424  aaattaacatttagtatcctgctagatgtaacacaagcttgctagttaacatgcttggta 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604  aaattaacatttagtatcctgctagatgtaacacaagcttgctagttaacatgcttggta 545

                                                                        
Query: 484  tgaactgtttctgttacagtcctccgctctcagcatttcaactaacaaaccacagcaagg 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544  tgaactgtttctgttacagtcctccgctctcagcatttcaactaacaaaccacagcaagg 485

                                                                        
Query: 544  cacaccaagaaataaatgcattagggctcctatgctcaacagacatgctaacatctccct 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484  cacaccaagaaataaatgcattagggctcctatgctcaacagacatgctaacatctccct 425

                                                     
Query: 604  ttacaatgggtttttaacatataaaatacttacttagtctt 644
            |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 424  ttacaatgggtttttaacatataacatacttacttagtctt 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no542_a12.g1 MSMg01no542_a12.g1 CHROMAT_FILE:
MSMg01no542_a12.g1 PHD_FILE: MSMg01no542_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:55 2005
         (554 letters)



>mm_chr18_45023132_45024085
          Length = 954

 Score = 1048 bits (542), Expect = 0.0
 Identities = 551/554 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgcttgctgacttgctctccatggcttgctcagcgtgctttcttacaccatccagga 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttgcttgctgacttgctctccattgcttgctcagcgtgctttcttacaccatccagga 260

                                                                       
Query: 61  ccacctgccagggagggcactgcccagagtggactgacccttgccacatcaatcagcagt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacctgccagggaaggcactgcccagagtggactgacccttgccacatcaatcagcagt 320

                                                                       
Query: 121 caaggaaatacctcacagacttgtttataggccagaggcgggtatttttttaagtgaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaggaaatacctcacagacttgtttataggccagaggcgggtatttttttaagtgaggt 380

                                                                       
Query: 181 tccctcttcttagatgactctagcttgtcaggtggacaaaaagctaacgaacacatcaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccctcttcttagatgactctagcttgtcaggtggacaaaaagctaacgaacacatcaac 440

                                                                       
Query: 241 tgatcaatggctttactgaagaatgtgcatatagagccaggtgtaaaagccatccaccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatcaatggctttactgaagaatgtgcatatagagccaggtgtaaaagccatccaccaa 500

                                                                       
Query: 301 tatcccaaatgctcaggatgataaacaaggggatccataaagcgacagttggaattacat 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcccaaatgctcaggatgatgaacaaggggatccataaagcgacagttggaattacat 560

                                                                       
Query: 361 atgatatcttttcccagtaacttagatagttcatctagcctgaacagatacaaactttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgatatcttttcccagtaacttagatagttcatctagcctgaacagatacaaactttgc 620

                                                                       
Query: 421 tctgttagttttatacttccacacttgccagaatggataatattagtcttagagatagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgttagttttatacttccacacttgccagaatggataatattagtcttagagatagat 680

                                                                       
Query: 481 attgttaaatttgtgtgaggctacattttctgttgtcaaatgtccataaatgttaaagtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attgttaaatttgtgtgaggctacattttctgttgtcaaatgtccataaatgttaaagtg 740

                         
Query: 541 ccttttgcgaaata 554
           ||||||||||||||
Sbjct: 741 ccttttgcgaaata 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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