Query= MSMg01no542_c14.b1 MSMg01no542_c14.b1 CHROMAT_FILE:
MSMg01no542_c14.b1 PHD_FILE: MSMg01no542_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:06 2005
(696 letters)
>mm_chr18_29650576_29651671
Length = 1096
Score = 1207 bits (624), Expect = 0.0
Identities = 679/698 (97%), Gaps = 3/698 (0%)
Strand = Plus / Plus
Query: 1 tctttaccttcacgatctgatcagctgggccttggagggcttgatatttgttttgagggc 60
|||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 201 tctttaccttcatgatctgatcagctgggccttagagggcttgatatttattttgagggc 260
Query: 61 agatttcattcttctagaagttataatttgaaacaacaggatttcaatattgaggtcaac 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatttcattcttctagaagttataatttgaaacaacaggatttcaatattgaggtcaac 320
Query: 121 ttttcttaaaactccaacaatatctggtccctataaaactgtgtagaagttttctggttt 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttcttaaaactccaacaatatccggtccctataaaactgtgtagaagttttctggttt 380
Query: 181 ggaaaaatgaaaaagcaattttatgacaacaaattggaaggggccaaggacacagtgtag 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 ggtaaaatgaaaaagcaattttatgacaacaaattggaaggggccaaggacacagcgtag 440
Query: 241 ccaaagaaaagctgacctgagtttatacgaaaactgagaaccacagtgcacgcatgtaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaagaaaagctgacctgagtttatacgaaaactgagaaccacagtgcacgcatgtaat 500
Query: 301 ctcagcactgggtatacagaaatggggagatccctcacgattgctgaccaaacagtctac 360
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 501 ctcagcactgggtatacagaaatggggagatccctcaagattgctgaccaaagagtctac 560
Query: 361 ccaaactggtggttcaccaagagacactacttcaaaagataaggtgacaaaaagttgaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaactggtggttcaccaagagacactacttcaaaagataaggtgacaaaaagttgaga 620
Query: 421 aagatactaaattcagcatatttggttttatgtggaagttcattacatacttgcacttta 480
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct: 621 aagatactaaattcagcatatttggttttatgtggaagtccatgacatacttgcacatta 680
Query: 481 gtgttgtacaagaagaaaaaaa--tggttcaatttgcattcttctacatgcagaattaca 538
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgttgtacaaggagaaaaaaaaatggttcaatttgcattcttctacatgcagaattaca 740
Query: 539 gttagaccagcaccattgattggaaatactttcattttttccattgtatggttttggttt 598
|||||||||||||||||||||| |||||||||||||||| ||| || |||||||||||||
Sbjct: 741 gttagaccagcaccattgattgaaaatactttcattttt-ccactggatggttttggttt 799
Query: 599 gtcaaagatcaagtgatcttagatgtgggtttatttctggatgttgaattctactccatt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gtcaaagatcaagtgatcttagatgtgggtttatttctggatgttgaattctactccatt 859
Query: 659 gatctacttgtctgtctctgtaccaataccatgcagtt 696
||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gatctacttgtctgtctctgtaccaataccatgcagtt 897
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_c14.g1 MSMg01no542_c14.g1 CHROMAT_FILE:
MSMg01no542_c14.g1 PHD_FILE: MSMg01no542_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:06 2005
(615 letters)
>mm_chr18_29670189_29671203
Length = 1015
Score = 1174 bits (607), Expect = 0.0
Identities = 613/615 (99%)
Strand = Plus / Minus
Query: 1 cacaggaagtcctcctttaatgatgaccattgagggtgttttcttatttacaatagtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 cacaggaagtcctcctttaatgatgaccattgagggtgttttcttatttacaatagtaat 756
Query: 61 ttctttaccataccaatcatactaattataacaagcaatttgcttactgttttgtatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ttctttaccataccaatcatactaattataacaagcaatttgcttactgttttgtatgga 696
Query: 121 tttattttaaaactcaagtcttgaatttagaaaacatatttcctggctggtcttcacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tttattttaaaactcaagtcttgaatttagaaaacatatttcctggctggtcttcacttt 636
Query: 181 gcactgagcagagctctgccacttggagtcttgctgctgcagcacatttcatttttgctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gcactgagcagagctctgccacttggagtcttgctgctgcagcacatttcatttttgctg 576
Query: 241 agtcttttcctcattttggccagtggcatatattggagtctttaaactatgacttttctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agtcttttcctcattttggccagtggcatatattggagtctttaaactatgacttttctg 516
Query: 301 ttcatataaccatgatgtataacaaattggatctcaagctcagtgcttggacttgcttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttcatataaccatgatgtataacaaattggatctcaagctcagtgcttggacttgcttta 456
Query: 361 tttatttattttgttcactaaactaaaccaatctagtgattatctgacctctactcaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tttatttattttgttcactaaactaaaccaatctagtgattatctgacctctactcaact 396
Query: 421 ttcagaaaactggatgtattactgaagaaacagaaatttggcaaggaaatacttcttggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttcagaaaactggatgtattactgaagaaacagaaatttggcaaggaaatacttcttggt 336
Query: 481 ctgtgctaccaagtaaaattgtatatatttacagttgggaacagagaagaataagaataa 540
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 335 ctgtgctaccaagcaaaattgtatacatttacagttgggaacagagaagaataagaataa 276
Query: 541 tagttgcaagctcagcaggttttgttaccatagaccactagtcattctacttcaagtcgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tagttgcaagctcagcaggttttgttaccatagaccactagtcattctacttcaagtcgt 216
Query: 601 tggccttggctgacc 615
|||||||||||||||
Sbjct: 215 tggccttggctgacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
