BAC Information

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BAC

Clone NameMSMg01-542G13
Chromosome18 (Build37)
Map Location 82,650,160 - 82,827,712
singlet/doubletdoublet
Overlap geneMbp, EG637748, Zfp236
Upstream geneLOC100039458, LOC100040871, B020010K11Rik, Galr1
Downstream geneLOC100039563, Zfp516, LOC100041001, 4921531P14Rik, LOC665284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542G13.T7 (MSMg01no542_g13.b1)MSMg01-542G13.TJ (MSMg01no542_g13.g1)
ACCAG608191AG608192
length761761
length of high quality
(start - end)		687 (73 - 759)674 (77 - 750)
definitionCHROMAT_FILE: MSMg01no542_g13.b1 PHD_FILE: MSMg01no542_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:26 2005CHROMAT_FILE: MSMg01no542_g13.g1 PHD_FILE: MSMg01no542_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,827,026 - 82,827,712)(82,650,160 - 82,650,731)
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCG
GAATTCATTGAAGAATTACTTTTCAAATTTATGTTTGAGAAGCAATAGCT
TTTGATGTCATTAAGGGTTATTCCCTTAATATATTTAGTGTTTAGATGGA
AGTTGTGTTTTTAATGAAAATGTTGCTGTGTTCCAGGCCACGATCTTTCA
GACTTTACCTCTGCAGCAGGTGGAAGCCCAGGTCTCCTCAGTGTCCAGTG
AGCAGAGTTCTCAGGCAGTGAGTGACGTCATCCAGCAGCTTCTGGAACTG
TCTGAGCCCGGCCCAGTGGAGGCACAGCAGTCCCCACAGTCTGGGCGACA
ACTGAGTGTGACAGTGGGCATCAACCAGGACATCCTCCAGGTGAAGCGCG
CTTACCTGCTGGGCAAGACTCACATGTGGGTCTCAGAGTCAGTTTGTTAG
TGAGCAGGACAGATGCAGAGACACTGGCTAAAGATGTGGCTACAGTGGAA
ATGGTAGCAGTGACAGAAAATATGCCTATGTGATTACCAACAGGAAGTGC
TGAGGTCTAGATGGCTCATTAATCTGTACATTTAGGAAAAATGGAAACTC
CTTTTTAAGTTATGTTGTACATGAACTGATTGGATAGGGGTAGCTTTTTA
ACAAAAGCCTGTCCTGTTGAAAGAGTTGGAAGAAGCGCCTCCTCCTACCC
GAGGTGCAGGTGTACTCTTTAGAGCATCCTCGGCATGTGCTGTCGTGTGC
ATGGCCGACAC

ACAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCTGCCAGAGGTACATAGTG
AGACCTTGTCTCCAAACAAACAGAAAGGAAAGAGAAAACAGAAGCTGGTG
GTTCCCTACCTGTCTCAGGCCTAGGGACCCTCCTGCTTCTCTTTTTCTGT
TTCGTTGACGGACTTTAGTTTCTCCTTTCATTCACACTTTAGCTTGCGAT
CCATTTTTAGTAACTTTTGTGTCAAGTATGAAGTTTAAGCTGAGGCTTTT
TGCTATTGTGCCTTTCGGGTTTAATGAAAGAATATTGGGAAACATAAGCC
AGGCTGGGTAGCACATGGCTTTAATCCTACTAGTTAGGAGGCAGAGACAG
GTGGATCTCTCTAAGTTACAGGCTAAGCTCTTCTTCATAATCAAGTTCCA
GGCTAGCCAGGGCTGCGCAGTGAAGCCTTGTCTCAGAAGGAAAATAAAAG
ACAAACAAACAATGAAGAAACTGCTTTTGTTTCCTTATCTTGTCTTTGGC
TAGACTCCTGAGTGCTGTACTGAGTAGGATTGTCAGGACTGGCCTGAGGA
CAGCATTCTGTTTCCTTTGATTCATTATTTGTATAAACAGAAAGTGTCAG
CCGGGCGTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGC
AGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG
GACAGCCAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_g13.b1 MSMg01no542_g13.b1 CHROMAT_FILE:
MSMg01no542_g13.b1 PHD_FILE: MSMg01no542_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:26 2005
         (687 letters)



>mm_chr18_82826826_82827912
          Length = 1087

 Score = 1313 bits (679), Expect = 0.0
 Identities = 685/687 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaatttatgtttgagaagcaatagcttttgatgtcattaagggttattcccttaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 tcaaatttatgtttgagaagcaatagcttttgatgtcattaagggttattcccttaatat 828

                                                                       
Query: 61  atttagtgtttagatggaagttgtgtttttaatgaaaatgttgctgtgttccaggccacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 atttagtgtttagatggaagttgtgtttttaatgaaaatgttgctgtgttccaggccacg 768

                                                                       
Query: 121 atctttcagactttacctctgcagcaggtggaagcccaggtctcctcagtgtccagtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 atctttcagactttacctctgcagcaggtggaagcccaggtctcctcagtgtccagtgag 708

                                                                       
Query: 181 cagagttctcaggcagtgagtgacgtcatccagcagcttctggaactgtctgagcccggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 cagagttctcaggcagtgagtgacgtcatccagcagcttctggaactgtctgagcccggc 648

                                                                       
Query: 241 ccagtggaggcacagcagtccccacagtctgggcgacaactgagtgtgacagtgggcatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ccagtggaggcacagcagtccccacagtctgggcgacaactgagtgtgacagtgggcatc 588

                                                                       
Query: 301 aaccaggacatcctccaggtgaagcgcgcttacctgctgggcaagactcacatgtgggtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aaccaggacatcctccaggtgaagcgcgcttacctgctgggcaagactcacatgtgggtc 528

                                                                       
Query: 361 tcagagtcagtttgttagtgagcaggacagatgcagagacactggctaaagatgtggcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tcagagtcagtttgttagtgagcaggacagatgcagagacactggctaaagatgtggcta 468

                                                                       
Query: 421 cagtggaaatggtagcagtgacagaaaatatgcctatgtgattaccaacaggaagtgctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cagtggaaatggtagcagtgacagaaaatatgcctatgtgattaccaacaggaagtgctg 408

                                                                       
Query: 481 aggtctagatggctcattaatctgtacatttaggaaaaatggaaactcctttttaagtta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aggtctagatggctcattaatctgtacatttaggaaaaatggaaactcctttttaagtta 348

                                                                       
Query: 541 tgttgtacatgaactgattggataggggtagctttttaacaaaagcctgtcctgttgaaa 600
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttttgtacatgaactgattggataggggtagctttttaacaaaagcctgtcctgttgaaa 288

                                                                       
Query: 601 gagttggaagaagcgcctcctcctacccgaggtgcaggtgtactctttagagcatcctcg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gagttggaagaagcgcctcctcctacccgaggtgcaggtgtactctttagagcatcctcg 228

                                      
Query: 661 gcatgtgctgtcgtgtgcatggccgac 687
           ||||||||||| |||||||||||||||
Sbjct: 227 gcatgtgctgttgtgtgcatggccgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no542_g13.g1 MSMg01no542_g13.g1 CHROMAT_FILE:
MSMg01no542_g13.g1 PHD_FILE: MSMg01no542_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:26 2005
         (674 letters)



>mm_chr18_82649960_82651033
          Length = 1074

 Score = 1075 bits (556), Expect = 0.0
 Identities = 568/572 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagcctgccagaggtacatagtgagaccttgtctccaaacaaacagaaaggaaagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagcctgccagaggtacatagtgagaccttgtctccaaacaaacagaaaggaaagagaa 260

                                                                       
Query: 61  aacagaagctggtggttccctacctgtctcaggcctagggaccctcctgcttctcttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagaagctggtggttccctacctgtctcaggcctagggaccctcctgcttctcttttt 320

                                                                       
Query: 121 ctgtttcgttgacggactttagtttctcctttcattcacactttagcttgcgatccattt 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtttcgttgacgggctttagtttctcctttcattcacactttagcttgcgatccattt 380

                                                                       
Query: 181 ttagtaacttttgtgtcaagtatgaagtttaagctgaggctttttgctattgtgcctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagtaacttttgtgtcaagtatgaagtttaagctgaggctttttgctattgtgcctttc 440

                                                                       
Query: 241 gggtttaatgaaagaatattgggaaacataagccaggctgggtagcacatggctttaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 gggtttaatgaaagaatattgggaaacataagccaggctgggtagtacatggctttaatc 500

                                                                       
Query: 301 ctactagttaggaggcagagacaggtggatctctctaagttacaggctaagctcttcttc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 ctactagttaggaggcagagacaggtggatctctctaagttacaggctaacctcttcttc 560

                                                                       
Query: 361 ataatcaagttccaggctagccagggctgcgcagtgaagccttgtctcagaaggaaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataatcaagttccaggctagccagggctgcgcagtgaagccttgtctcagaaggaaaata 620

                                                                       
Query: 421 aaagacaaacaaacaatgaagaaactgcttttgtttccttatcttgtctttggctagact 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagacaaacaaacgatgaagaaactgcttttgtttccttatcttgtctttggctagact 680

                                                                       
Query: 481 cctgagtgctgtactgagtaggattgtcaggactggcctgaggacagcattctgtttcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgagtgctgtactgagtaggattgtcaggactggcctgaggacagcattctgtttcct 740

                                           
Query: 541 ttgattcattatttgtataaacagaaagtgtc 572
           ||||||||||||||||||||||||||||||||
Sbjct: 741 ttgattcattatttgtataaacagaaagtgtc 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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