BAC Information

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BAC

Clone NameMSMg01-542I19
Chromosome18 (Build37)
Map Location 80,082,168 - 80,082,529
singlet/doubletsinglet
Overlap genenone
Upstream geneSetbp1, LOC100039242, LOC100039250, LOC383311
Downstream geneLOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542I19.T7 (MSMg01no542_i19.b1)MSMg01-542I19.TJ (MSMg01no542_i19.g1)
ACCAG608297AG608298
length782763
length of high quality
(start - end)
357 (74 - 430)425 (77 - 501)
definitionCHROMAT_FILE: MSMg01no542_i19.b1 PHD_FILE: MSMg01no542_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:37 2005CHROMAT_FILE: MSMg01no542_i19.g1 PHD_FILE: MSMg01no542_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTGTGATAATCAAATTTGGATACTATCCTAGGTGCCCAAA
AACATAATTTCACTAATCCCTTGATTCAATTAACTCAATATCTTGTTTGA
ATAAAGTCCAAAATATATTGTATCATGAGATGTTTACAAAAATATAAGTA
TTCATTATAATTCTAATTCATCAATTTAAAAAGAAATTTAAGTTCTTGCT
ATTGTTGCCACACCTGCCCACCATGATGGACTCTGACCTCTCTAGGACTG
TAAGCCAAAATAAACTTTCTTCAGTGCATTGCAAAAAGAAGAAGGAGGAG
GAGAAGGAGGAGAAGGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAGGAAGGGAAGGGAAGGGAAGGTATAGGTTTTTTTTTNTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTTNTNTTTTT
TTTTTNTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTGTGTTTTGT
TGTTTTGTGTGTTTTTTTTTTTGTTTTTTTTTTTTTGTGGTTTTTTTTTT
GTTTTTTTGGTTGTTTTTTTTTTTGTTTTGTTTTTTTGTTTTGTTGTTTT
GTGTTTTTTTTTTTTTTTTTTTTTTTGTGTGTTTTTGTTTTTGTTTTTTT
TTTTTTTTTTGTTGTTTTTGTNGNTTTTTTGTTTTTTTTTTTCTGTTTTT
TTGTTTTTTTTTTGTGTGTGGTTGTGTTTTGT
NCACCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAGGCACACCGTACAGGAGAT
GATTCCAGTCTTTCGACCACGGTCCATTTTCACTTCACAAGACTTGTCAT
GGTTGCAGAAAGGGCAGGTGAACTCGGTCTCCAGGGTGCCTGTCATCTTC
TTGGGGGGCGGCTTTCGCTTGGACTTCCTTCGTCCCATTACTGCAGGCAG
GGGGTGGGGGTGGGGGTGGGGATAAAACAGTCTGTAGTCCAACTGCTGCA
AGAAAGGTCAGCTGTGAACGGAAAGTCCAAGAATCTAGTCGGTAGTTGCT
CAGTCCCACGAGGCTGGTTGGTTCCGCTGCTCTGTGGTAGAAGTAGGTTC
CAACAGATGTGCTTGCAAGCAGGCAAAGAAGAGCCGGAACTCTTTTTATC
TGGTCACGCTGGCCTAGACCAGATGTCTGCTTGCCTCTGCTTCCCAACTC
CAAGGCAGAAAGGAGAGACTATTGTGTCTGGCTTTGGGCAGAGCTTGAGT
ATATATATTTCCTCCAAGCCCCATCTCCACGGGGACACACCCCCTTCCAC
CAGGCCCCACCTCCTGATAAACCACACCCCTGTTCCAAGCATAATTCAAT
CACCACATGTAGTGGGTTAATCCCTCGTTGTCAACTTGACCTATATCTTG
GAAGTAATTTTAAATTTCGGATTGGGAAGGTTCACCCGGTGACCCTTAAT
CTGGGATGCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_i19.b1 MSMg01no542_i19.b1 CHROMAT_FILE:
MSMg01no542_i19.b1 PHD_FILE: MSMg01no542_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:37 2005
         (357 letters)



>mm_chr18_80081968_80082724
          Length = 757

 Score =  646 bits (334), Expect = 0.0
 Identities = 355/362 (98%), Gaps = 5/362 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttggatactatcctaggtgcccaaaaacataatttcactaatcccttgattcaattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttggatactatcctaggtgcccaaaaacataatttcactaatcccttgattcaattaa 260

                                                                       
Query: 61  ctcaatatcttgtttgaataaagtccaaaatatattgtatcatgagatgtttacaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaatatcttgtttgaataaagtccaaaatatattgtatcatgagatgtttacaaaaat 320

                                                                       
Query: 121 ataagtattcattataattctaattcatcaatttaaaaagaaatttaagttcttgctatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ataagtattcattataattctaattcatcaatttaaaaagaaatttaagttcttgctact 380

                                                                       
Query: 181 gttgccacacctgcccaccatgatggactctgacctctctaggactgtaagccaaaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgccacacctgcccaccatgatggactctgacctctctaggactgtaagccaaaataa 440

                                                                       
Query: 241 actttcttcagtgcattgcaaaaagaagaaggaggaggagaaggaggagaaggaaaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actttcttcagtgcattgcaaaaagaagaaggaggaggagaaggaggagaaggaaaggaa 500

                                                                       
Query: 301 ggaaggaaggaaggaaggaagg-aagg-aagg-aagg-aagg-aagggaagggaagggaa 355
           ||||||||||||||||| |||| |||| |||| |||| |||| |||||||||||||||||
Sbjct: 501 ggaaggaaggaaggaagaaagggaagggaagggaagggaagggaagggaagggaagggaa 560

             
Query: 356 gg 357
           ||
Sbjct: 561 gg 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)