BAC Information

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BAC

Clone NameMSMg01-542J08
Chromosome18 (Build37)
Map Location 83,692,064 - 83,692,570
singlet/doubletsinglet
Overlap genenone
Upstream geneMbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik, LOC665284
Downstream geneTshz1, Zadh2, LOC669856, Zfp407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542J08.T7 (MSMg01no542_j08.b1)MSMg01-542J08.TJ (MSMg01no542_j08.g1)
ACCAG608322AG608323
length759762
length of high quality
(start - end)		511 (44 - 554)688 (75 - 762)
definitionCHROMAT_FILE: MSMg01no542_j08.b1 PHD_FILE: MSMg01no542_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:40 2005CHROMAT_FILE: MSMg01no542_j08.g1 PHD_FILE: MSMg01no542_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGA
ATTCCTTAAATCCAAGTTCTACCCAGCTTCTCCATGGCTCTGTGCTCCAC
ACCTCATTGTTGCTTCTGGGGACAGGAGGCATGGAGTGTCTGGTCTCATC
TGTGTCCTGGGTCACATCTTTCTCACACCTTCCCTGGACATGGCATGAGG
CATGTCCCATCAGACGGCAGGACTATCAGCCTGGCACCGGGGCTTTCTCC
CCAGGACAGCTGACTGGTAGGCAGGGTGGGGTTCACCCTGCTTGCCACAG
TCACCCCTTCCACCACCACCCTCACAGGCAGCATCAGCAGCAGGATCTTA
AAGAGCCCAGTTCTGAGTTTAGTTTTCTAGCCCTGTTTCTTTATTTCAGT
GATTAATATTAATAAATCCCTACTTTCCTTCCTGAGAAATTCTTAGCACT
TTGTTTGAAAGATAAAGAACCTATTTTGCATGAAAGCTTAAAGTATCCAC
CTTTCCAACCTCTTTTCTTTACTAAAGATATGTTAAAGTGTGTGTATGTG
TGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTTGCAAGTTTTATACTGAGAGTG
TTAACAACTCTTTTCATGAAGGGTTACCGGTCTATAATTTGCTTTTTCGT
TTTTTTTCTTTTCTGGGTCTTTATCCGGTGAGGTATCAGGATAATAGTCA
CTTCCTAAAAAAGAAATAGGAAATGTTCCTTCAGTTTCTATTTTGCAAAA
TAATATGATGACCACTGATGCTCACTTTTCTTTGAAGGTCTTATAGATTC
TACACTGAATTCATTTGATCCTTGAATTATTCGCAGTGGAAGTTTTTACT
TACTGTTTTCTAACTCACTGCTTAATTATTTATTTCATCTTAATTTAAGC
TCTGTAGGTCACATCTATCAAGAAATTCCTACATTTATTTTAGATTTTCC
AGTTTGGTGGAATACAGATTTTAAAAGTATAGCATGATGATTCTTTGAAT
TTTTGTAATATATGATGCAATGTTTTCTTTAATTTCATCTTTAATTTTAT
TAATTTGAACATTTGTGTCTTTGGTGAGTTTGGCTAAAGGTTTGTCAATC
TCATACAAACTTGGTAGAAGACTTTCTCAAAGACTTAACTTCATTTCACG
GAATCTTTGTATTAATTATTATGTCTCCCCCATCGATGTTAGACATGAGT
CCGATTACTTCTTTTCTATCCTCTTAGGATGCTATTTACTCTTGTTCTAG
ATCTTTTGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_j08.b1 MSMg01no542_j08.b1 CHROMAT_FILE:
MSMg01no542_j08.b1 PHD_FILE: MSMg01no542_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:40 2005
         (511 letters)



>mm_chr18_83691860_83692770
          Length = 911

 Score =  980 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattccttaaatccaagttctacccagcttctccatggctctgtgctccacacctcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattccttaaatccaagttctacccagcttctccatggctctgtgctccacacctcat 264

                                                                       
Query: 65  tgttgcttctggggacaggaggcatggagtgtctggtctcatctgtgtcctgggtcacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttgcttctggggacaggaggcatggagtgtctggtctcatctgtgtcctgggtcacat 324

                                                                       
Query: 125 ctttctcacaccttccctggacatggcatgaggcatgtcccatcagacggcaggactatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttctcacaccttccctggacatggcatgaggcatgtcccatcagacggcaggactatc 384

                                                                       
Query: 185 agcctggcaccggggctttctccccaggacagctgactggtaggcagggtggggttcacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcctggcaccggggctttctccccaggacagctgactggtaggcagggtggggttcacc 444

                                                                       
Query: 245 ctgcttgccacagtcaccccttccaccaccaccctcacaggcagcatcagcagcaggatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgcttgccacagtcaccccttccaccaccaccctcacaggcagcatcagcagcaggatc 504

                                                                       
Query: 305 ttaaagagcccagttctgagtttagttttctagccctgtttctttatttcagtgattaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaaagagcccagttctgagtttagttttctagccctgtttctttatttcagtgattaat 564

                                                                       
Query: 365 attaataaatccctactttccttcctgagaaattcttagcactttgtttgaaagataaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attaataaatccctactttccttcctgagaaattcttagcactttgtttgaaagataaag 624

                                                                       
Query: 425 aacctattttgcatgaaagcttaaagtatccacctttccaacctcttttctttactaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacctattttgcatgaaagcttaaagtatccacctttccaacctcttttctttactaaag 684

                                      
Query: 485 atatgttaaagtgtgtgtatgtgtgtg 511
           |||||||||||||||||||||||||||
Sbjct: 685 atatgttaaagtgtgtgtatgtgtgtg 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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