Query= MSMg01no543_c05.b1 MSMg01no543_c05.b1 CHROMAT_FILE:
MSMg01no543_c05.b1 PHD_FILE: MSMg01no543_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:24 2005
(194 letters)
>mm_chr18_70313052_70313644
Length = 593
Score = 350 bits (181), Expect = e-101
Identities = 190/193 (98%), Gaps = 1/193 (0%)
Strand = Plus / Minus
Query: 1 ttgttagatagattatgttggttgactttattactctaagtatgttcttatgcttcttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttgttagatagattatgttggttgactttattactctaagtatgttcttatgcttcttag 333
Query: 61 accatgaagaacacactatacttatttgttttaagaagtaaattacccttagtatagaaa 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 accatgaagaacacagtatacttatttgttttaagaagtaaattacccttagtatagaaa 273
Query: 121 tacagaaagcacataatttatattttacatgccttcacaaagtagactgttatctttata 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 272 tacagaaagcacataatttatattttacatgccttcacaaagtagagtgttatctt-ata 214
Query: 181 atattaaaaattg 193
|||||||||||||
Sbjct: 213 atattaaaaattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 593
Length adjustment: 8
Effective length of query: 186
Effective length of database: 585
Effective search space: 108810
Effective search space used: 108810
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no543_c05.g1 MSMg01no543_c05.g1 CHROMAT_FILE:
MSMg01no543_c05.g1 PHD_FILE: MSMg01no543_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:24 2005
(580 letters)
>mm_chr18_70133664_70134643
Length = 980
Score = 992 bits (513), Expect = 0.0
Identities = 566/589 (96%), Gaps = 10/589 (1%)
Strand = Plus / Plus
Query: 1 acccactggtgataaaaattcttaaaagaaaaacagaatcgacaggactttgttaccgtg 60
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||
Sbjct: 201 acccactggtgataaaaattcttaaaagaaaaacagagtcgacagaactttgttatcgtg 260
Query: 61 agaaagagcactcaagacagcctttcagctcatatgtttaataaggaaaaagtaagctct 120
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 aggaagagcactcaagacagcctttcagctcatatgtttaataaggaaagagtaagctct 320
Query: 121 agcaatagggtaaacaggcaaagatgcctgctggctctacttatatggatagaaggggga 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 agcaatagggtaaacaggcaaagatgcctgctggcactacttatatggatagaaggggga 380
Query: 181 aaggtgacaggaaaataaaggagaggtactgtcttactcagggtttctattcctgcacaa 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggtgacaggaaaataaaggcgaggtactgtcttactcagggtttctattcctgcacaa 440
Query: 241 acatcatgaccaagaagcaagttggagaggaaagggtttattcggcttacacttccatgc 300
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 acatcatgaccaagaaacaagttggagaggaaagggtttattcgg-ttacacttccatgc 499
Query: 301 tgctgttcatcaccaaaggaagtcaggactggaactcaaacaggtcagggagcaggagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgctgttcatcaccaaaggaagtcaggactggaactcaaacaggtcagggagcaggagct 559
Query: 361 gatgcagaggccatggagggatgttctttactggcttgcctcccctggcttgctcagcct 420
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 560 gatgcagaggccatggagggatgttctttactggcttgcttcccttggcttgctcagcct 619
Query: 421 gctctcttatagaacccaggactaccagcccagagatggtcccacccacaaggggccttt 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 620 gctctcttatagaacccaggactaccagcccagagatagtcccacccacaaggggccatt 679
Query: 481 cccccttgatcactaattgagaaaatgccttacagttgtatctcatggaggcatttcctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cccccttgatcactaattgagaaaatgccttacagttgtatctcatggaggcatttcctc 739
Query: 541 ---------tcctttctctgtgataactccagctgtgtcaagttgacac 580
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 740 aactcaaactcctttctctgtgataactccagctgtgtcaggttgacac 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
