BAC Information

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BAC

Clone NameMSMg01-543E10
Chromosome18 (Build37)
Map Location 30,459,159 - 30,459,666
singlet/doubletsinglet
Overlap genePik3c3
Upstream gene4930578E11Rik, LOC666073
Downstream geneLOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543E10.T7 (MSMg01no543_e10.b1)MSMg01-543E10.TJ (MSMg01no543_e10.g1)
ACCAG608850AG608851
length754758
length of high quality
(start - end)
537 (50 - 586)489 (80 - 568)
definitionCHROMAT_FILE: MSMg01no543_e10.b1 PHD_FILE: MSMg01no543_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:35 2005CHROMAT_FILE: MSMg01no543_e10.g1 PHD_FILE: MSMg01no543_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATGATTTCCTATGAGATACTACTTAATTTTAACAAAATAT
GTACATATTTCAATCATAATGTTTCATGTGCTTCTGAAAATTCATGGCAT
TTCTAATTAAAAATGACCTTTAGGGTGTCATTAATAACAGCTGTCCCACT
AGCTCAGCAGCAATTTACAGTCAGGTTTCACACTGTGTTTTATGTCCCAT
TGGGCTGGCATAAACTAGTAAGTCACCTTTAAGAACACACTCACTCTAAA
AAACAAGAACACTTGCCACATTAGTCCACCTCACTAGGAATGACTAAGGC
AAAGTCTAACAATGCCTGTGTCAACTACATGCCTCCTCAGCTGCGCCGGG
TGCATACAGACACTCAGCATGAAGGTTACAGTTGCTATGGGTACCCAGAG
GATGCAAGACCACCTTGGGACATTTTACACATGTGCACAACTGCCAGCAG
CTGAAGGTGAAGGCAGGGGTTTGAAAGAGAGTTATGGCCATGCACCTCTG
TACTTCAAAGGTGTACAGGCTCTGCAGGGCCACGATGAATGTGGCCTCTT
GTACACTGAGTTGGAATGGATCTGAACTACTCCCTAGTTGTGCTGCATTA
AAGCATTTTTCATTAGAAGCCTTTTCTCCAGACAGAGGACTAGCAGCTCT
GGTGCCAGTGGAAGGTCATCATGTAACTAACTGGAGGGCAGCCTCTCCTC
TCAN
TCACCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAATGTCTTTAATTTCTTT
CTTTCTTTCTTCCTCAATCCAGTGGTCATGGAGTAGTGAACTGTTCAGTT
TTCATGACCTTGTAGACTTCCTATTGTTTCTGTTTTTGTTGAATTCCAGC
TTTAATGAATGGTGATCTGATGATAAGATGTAAAAGGTTAGTTTAATTTT
CTTGTATCTGTTGAGGCTTGCTTTGTGACCAAGTATATGGTTAATTTTGG
AGAAGGTTTCATGGTGTGCTGAGAAGGTATTTTTTTGTGTGTTTAGGTAA
AATGTTATGTAGATATCTGCTAGGTCCATTTGATTCATAACATCAGTTAG
TTTCATTATTTACCCATTTAGTTTCAATCTCAATGAGCAGTCCATTGGTG
AGAGTATGGTGTTGGATTGTAGAAATCTCCCACTATTAATGTGTGGGGTT
TGATGTGTGATTTGAGCTTTAGTAATGTTTGTTTGTTTGTTTGTTTTTGT
TTTTTATGAATGTGCTCTTACATTTGGAACATAGATTATTGAGAACTGAC
ACATCATTCTTGGGTGGATTTTTTCCTCTAATGATTATGAAGTTACTTTC
CCCCCATTTTCCGAATAACTTTGGTTGAAAGTTCATCTTATTATATAGAA
TGGTCTTCTCCATCTTTGGTTCTCTGGGTTTATTTCCATGAAAAAAAAAA
CCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_e10.b1 MSMg01no543_e10.b1 CHROMAT_FILE:
MSMg01no543_e10.b1 PHD_FILE: MSMg01no543_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:35 2005
         (537 letters)



>mm_chr18_30458937_30459872
          Length = 936

 Score =  895 bits (463), Expect = 0.0
 Identities = 499/511 (97%), Gaps = 5/511 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  tgagatactacttaattttaacaaaatatgtacatatttcaatcataatgtttcatgtgc 82
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tgagata-tatttaattttaacaaaatatgtacatatttcaatcataatgtttcatgtgc 672

                                                                       
Query: 83  ttctg-aaaattcatggcatttctaattaaaaatgacctttagggtgtcattaataacag 141
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttctgaaaaattcatggcatttctaattaaaaatgacctttagggtgtcattaataacag 612

                                                                       
Query: 142 ctgtcccactagctcagcagcaatttacagtcaggtttcacactgtgttttatgtcccat 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctgtcccactagctcagcagcaatttacagtcaggtttcacactgtgttttatgtcccat 552

                                                                       
Query: 202 tgggctggcataaactagtaagtcacctttaagaacacactcactctaaaaaacaagaac 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgggctggcataaactagtaagtcacctttaagaacacactcactctaaaaaacaagaac 492

                                                                       
Query: 262 acttgccacattagtccacctcactaggaatgactaaggcaaagtctaacaatgcctgtg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acttgccacattagtccacctcactaggaatgactaaggcaaagtctaacaatgcctgtg 432

                                                                       
Query: 322 tcaactacatgcctcctcagctgcgccgggtgcatacagacactcagcatgaaggttaca 381
           |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 431 tcaactgcatgcctcctcagctgcgcggggtgcatacagacactca-catgaaggttaca 373

                                                                       
Query: 382 gttgctatgggtacccagaggatgcaagaccaccttgggacattttacacatgtgcacaa 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gttgctatgggtacccagaggatgcaagaccaccttgggacattttacacatgtgcacaa 313

                                                                       
Query: 442 ctgccagcagctgaaggtgaaggcaggggtttgaaagagagttatggccatgcacctctg 501
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 312 ctgccagcagctgaaggtgaaggcagggggttggaagagagttatggccatgcacctctg 253

                                          
Query: 502 tacttcaaagg-tgtacaggctctgcagggc 531
           | || |||||| | |||||||||||||||||
Sbjct: 252 tgctacaaaggct-tacaggctctgcagggc 223


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space:   488002
Effective search space used:   488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)