BAC Information

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BAC

Clone NameMSMg01-544D23
Chromosome18 (Build37)
Map Location 63,579,219 - 63,579,660
singlet/doubletsinglet
Overlap genenone
Upstream geneHtr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
Downstream geneLOC627792, Txnl1, Wdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544D23.T7 (MSMg01no544_d23.b1)MSMg01-544D23.TJ (MSMg01no544_d23.g1)
ACCAG609591AG609592
length732887
length of high quality
(start - end)		451 (55 - 505)---
definitionCHROMAT_FILE: MSMg01no544_d23.b1 PHD_FILE: MSMg01no544_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:50 2005CHROMAT_FILE: MSMg01no544_d23.g1 PHD_FILE: MSMg01no544_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTGTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGAGTAACATGACATAAGTGGACAAGAAGGTCAGCG
TTGAATAATACCTCAAGGAATTTCTGACTTGGTTTACAAAGCAGGAGTCA
ACGTGGAAAGCTTAAACCTCAGGTTGGTGGCTCAACAGGGGTCAAAACGC
AGTGAACATAATGATTTATGAACCCGCCAAGCCTTCAGCAGCTGCTGGTG
GGTTTGGACATAAGTCACTGTCACAGCATGCTAGCCAGAGCCAGGGGTTG
GCTGCTCTGAGACCCCCTGCCACCACCATGAACTCACAGGGCTTCTTTGT
TGAGCCAAACAGAACCAATGACCTCAAGCTCTTGTTCTTCTCTGGGTTTA
CTTTAAACAAAGTAAATTACATGTTCTAAATACCAGGTCTGATTCATGTA
TCATCCAGACTTGCTCAGTTTTAGAAAAAAAAATCATTTCCAAAAGATAT
AAATTTTTTCCCTAACAATTTTTATTANNNNNNCNCACCCCCCTTCCCTC
TTNCCCNCATTTAATTAAAAAAACATTAATTTTTCTTCTTCTTCTTTTCA
TAAACAAAAAAAAACATATACACCTTAATCTTCTTTATTTCTATCTTTTC
TTTTCCTTCTTCTTCCCTCTCCCCCCTCCTCCCTTTTACCTTTCACTACC
CTCCCACCTTTACTCACCCTATAATATAATAT

NCCGGGGGCCAAAGGGTAATGGGGAGCGGAGATGGGGGCAGGGAGAGGCT
ACCCAAAACAAAAACATACTCTTTCNNNNNNNNTTTTGGCGGGAGATTTA
AATNNNNNGGCCAAAAAGAAATAGNTGGGGGTAAAGGGCCCCGGGGGGGG
GGGGCCCGGCCCCGGGGGGNCTCGTTTGCGNAAAAAAAAAAAAGGGGGGG
GGAAAAACCCTTAAAAAAGAAAAAGGGAGAAATTTCCCCCGCGGAAAAAA
AAACCCGAAAAGACCCCCCCGGGGGAAAAAAGGGGGAAAAAAAGAAAAAA
AAACCCCCCCGGGGGGGGGGCGCCCAAAACAAAAAAAAAAAACCGCCCGC
ACAAAAAGCCCCCCCCCCNAAAAAAAAAGGGGCGCCGCCCCCCTACAAAA
AAAGGGCGCCAAAAAAAAAAAGAAGGGGGGGGGGGGGGGAGAAAAAAACC
CCCCCTTTGTTTAAAAAAAAAAAACCCCCCCCCGCCCCCATCCGTGTGGG
GGGGAGAACCGCAGGAAAAAAAAAGAACCCCCGTGGGGGGGGGGGTGCGA
CCGCTTTTTTATATGGTTGGAAAGAAAAAAAAAAAAAAAAAAGAAAGGAG
GACCAACAACCCACTAAGACGTGGAGATTTTGTTGGTGCGCGCCGGGAAA
AAAAAAAAAAAAAAAAAAAAAAGGAGGGAGTGGGTCCGCTTTTCCTCCCG
AGACCCCGGGGAGAGGGAGGAGGGGGGAGAGGGGCCGCACAAAGCCCCCC
CCTCCCGCCGGGGGGGGGGGAAGGAGAAAAAAAAAAAAAAGAAAGATAGA
TAGTGGAGGGGAGTGGACGCACGCACCAAAACAGAAAAAAGAAGGAGGGG
AGGGGAGGAAAGAAAAACAGAGAATACAAGCAGTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_d23.b1 MSMg01no544_d23.b1 CHROMAT_FILE:
MSMg01no544_d23.b1 PHD_FILE: MSMg01no544_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:50 2005
         (451 letters)



>mm_chr18_63579015_63579863
          Length = 849

 Score =  822 bits (425), Expect = 0.0
 Identities = 439/445 (98%), Gaps = 4/445 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagtaacatgacataagtggacaagaaggtcagcgttgaataatacctcaagg 64
           ||||||||||||||| |||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 205 gaattcagagtaacaggacataagtggacaagaaggtcagcgttgaata---cctcaagg 261

                                                                       
Query: 65  aatttctgacttggtttacaaagcaggagtcaacgtggaaagcttaaacctcaggttggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aatttctgacttggtttacaaagcaggagtcaacgtggaaagcttaaacctcaggttggt 321

                                                                       
Query: 125 ggctcaacaggggtcaaaacgcagtgaacataatgatttatgaacccgccaagccttcag 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggctcaacaggggtcaaaacgtagtgaacataatgatttatgaacccgccaagccttcag 381

                                                                       
Query: 185 cagctgctggtgggtttggacataagtcactgtcacagcatgctagccagagccaggggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagctgctggtgggtttggacataagtcactgtcacagcatgctagccagagccaggggt 441

                                                                       
Query: 245 tggctgctctgagaccccctgccaccaccatgaactcacagggcttctttgttgagccaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tggctgctctgagaccccctgccaccaccatgaactcacagggcttctttgttgagccaa 501

                                                                       
Query: 305 acagaaccaatgacctcaagctcttgttcttctctgggtttactttaaacaaagtaaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acagaaccaatgacctcaagctcttgttcttctctgggtttactttaaacaaagtaaatt 561

                                                                       
Query: 365 acatgttctaaataccaggtctgattcatgtatcatccagacttgctcagttttagaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acatgttctaaataccaggtctgattcatgtatcatccagacttgctcagttttagaaaa 621

                                    
Query: 425 aaaaa-tcatttccaaaagatataa 448
           ||||| |||||||||||||||||||
Sbjct: 622 aaaaaatcatttccaaaagatataa 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 849
Length adjustment: 10
Effective length of query: 441
Effective length of database: 839
Effective search space:   369999
Effective search space used:   369999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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