BAC Information

Click to search

BAC

Clone NameMSMg01-544H19
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544H19.T7 (MSMg01no544_h19.b1)MSMg01-544H19.TJ (MSMg01no544_h19.g1)
ACCAG609774AG609775
length749748
length of high quality
(start - end)		629 (51 - 679)621 (80 - 700)
definitionCHROMAT_FILE: MSMg01no544_h19.b1 PHD_FILE: MSMg01no544_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:10 2005CHROMAT_FILE: MSMg01no544_h19.g1 PHD_FILE: MSMg01no544_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:10 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNNCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTGAACTCACTGTCCTTTCAGGTCCACATTTGCTCTGGC
TCTGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGA
AATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCAC
TCACTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGAAT
TTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCA
TGTTTTTTTTTTTTTTTTTAGAGACAGGGTTTCTCTGTATAGCCCTGGCT
GTCCTGGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTAATACTTCTCCTGTGATTGCCGTAACTTGCAATCTAGT
GGGCTTATGTTTGATTCCTGTAATCTTTTTTTCTAATTCTTTTTCCTTTT
TATATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTAT
TTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTAT
TTNTGGTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAA
CTCAGTTTGCAGACCAGGCTGGCCTAGAACTCAGAAATCCTCCCATCTCT
GCCTCCCGAGTGCTGAGATTAAAGGCGTGCACCACCACACCCGGCTATT

TGGACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAGGAACATGTCCTTGTTG
TATACTTATCCTGCTCCCATTAATTGGGGTACTCTACTGTGGCAAGGGTA
CTTGCCATGTCTTAACTTGAAAACCAGAAAGTCAGTTGTGCATGTACAAG
TCTCTTTCTTCCAAGTAAGATGTCAGTTCCCAGGGAGGCCTCGAGAACTT
ATACTTTACTCACTCACACCCTACTCAAAATAGAAGTCTGGTTCGAAGTA
GTCTCTGCACTGAATCGGTGGTGCGGGTGTCTCTCTTTTGTTGGGGTGCG
GGGGTCCGTCCCCAGGGCAGCTTCTAAGAGCAAATGCCAGAAAAGTGTAT
ACATGGGTTTGTGCAGGAAATGCTGCTGGGTGGTCAGTTTGGGTCCAAGC
CTATTGCAGATAACTATAGAACAAAGGAAGCTTCTATTCTGATTGGTTTC
CGAGGACACATCCAACAAGAATATGTAGTCAATTCTGGCAATAATGGCAG
AAACAAGCTATGAGAAAGTGTCCTTATAATAGTAGTTAACAGCACAAAAT
GGCAGGCTAGCCAGGTAAGAGGTTACCTAGGCCTTATCTAATCTGAAGTA
GGCCTTCACATTCCATCTAGGCCTTAATATTTTACCTATACCTTAACAGC
CAGCAGTTTTGCCCTCTGAGCCATCGCACATGCATGTTCAGATCAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_h19.b1 MSMg01no544_h19.b1 CHROMAT_FILE:
MSMg01no544_h19.b1 PHD_FILE: MSMg01no544_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:10 2005
         (629 letters)



>mm_chr18_40467472_40468499
          Length = 1028

 Score =  377 bits (195), Expect = e-108
 Identities = 237/251 (94%), Gaps = 1/251 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgact 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 454 gaattctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgact 395

                                                                       
Query: 65  gaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacaca 124
           ||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 394 gaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacaca 336

                                                                       
Query: 125 ccctaacagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctg 184
           | |||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||
Sbjct: 335 ctctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctg 276

                                                                       
Query: 185 tcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttct 244
            |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 275 ccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttct 216

                      
Query: 245 acttcatgttt 255
           |||||||||||
Sbjct: 215 acttcatgttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1028
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1018
Effective search space:   630142
Effective search space used:   630142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |