GGCACTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGAATAAATGTTCTCTAGGCGATTTGGAGAGGTAAGTGCA
TCAATGTGGCACATGTCAGATCTGTGGGCTGAGCAAAAGAGCTTCTGCAG
CCTCTGCAGCCTCTGCATCTTCTGCATCCTCTGCAGCCTCCATTTGTTTT
ATAAATACCTATGTGATCATTTCAATGAATTGCTAAAGGCTGAGTGTGGA
CTAGCTTTAGAGCAAGAAATTCTAGGGGAACACATTCCCAAGGGCTTCCA
CAACTTTAGGGAACTTAGCTCAAAACATCCCAAGCAAATTCCAACATTGA
AGATTCTACAAAGACCTTACTGGGGCTCTGTTAGGAGAGAGGAAATATAG
CCCTGTGAATCTTCCCAGCGCTTACTGCCATCCAGGTGAAAAGTCATCTA
GATAGAAGACTATTCCTAATATCCCACCTCCCTCTGATTTTCATTCTTCT
TTAAAGAAGGTCAGAGAATCAAATAAAATGCTGCAAATATGCTGTCAGAG
ATGGGAGCAAGGGGTGGGAAAAAATTCACCTTTATCACAGATGGAAAAAT
CATGACCACAGATTTGAAGCACAGATAGACACATTAAAGACTGAAGTTAA
TAAGAAATTTATATAACAAATATATTGGCCTTTCCCTAAGAACTTTGTAC
AACAAAGAACTCCAGAGTGTAATAGTAGTCAAAACCTTAGATAGCTGTCA
GGCATGGN

NNGGCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACTTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACGGGAG
GATCCAGCAATACCACTCCTGGGCATATATCCAGAAGATGCCCCAACGGG
TAAGAAAGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAT
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGGATTTATGAAATTCCTAGCCAAATGGATAGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACAAAATATGTACTCACTG
ATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAA
TTTGCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACAC
TATGCCCN

Query= MSMg01no544_n04.b1 MSMg01no544_n04.b1 CHROMAT_FILE:
MSMg01no544_n04.b1 PHD_FILE: MSMg01no544_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:37 2005
         (689 letters)



>mm_chr18_50449899_50450987
          Length = 1089

 Score = 1294 bits (669), Expect = 0.0
 Identities = 681/685 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaataaatgttctctaggcgatttggagaggtaagtgcatcaatgtggcacat 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaataaatgttctctaggcaatttggagaggtaagtgcatcaatgtggcacat 264

                                                                       
Query: 65  gtcagatctgtgggctgagcaaaagagcttctgcagcctctgcagcctctgcatcttctg 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 265 gtcagatctgtgggctgagcaaaagagcttctgcagcctctggagcctctgcatcctctg 324

                                                                       
Query: 125 catcctctgcagcctccatttgttttataaatacctatgtgatcatttcaatgaattgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catcctctgcagcctccatttgttttataaatacctatgtgatcatttcaatgaattgct 384

                                                                       
Query: 185 aaaggctgagtgtggactagctttagagcaagaaattctaggggaacacattcccaaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaggctgagtgtggactagctttagagcaagaaattctaggggaacacattcccaaggg 444

                                                                       
Query: 245 cttccacaactttagggaacttagctcaaaacatcccaagcaaattccaacattgaagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttccacaactttagggaacttagctcaaaacatcccaagcaaattccaacattgaagat 504

                                                                       
Query: 305 tctacaaagaccttactggggctctgttaggagagaggaaatatagccctgtgaatcttc 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 tctacaaagaccttactggggctctgttaggggagaggaaatatagccctgtgaatcttc 564

                                                                       
Query: 365 ccagcgcttactgccatccaggtgaaaagtcatctagatagaagactattcctaatatcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccagcgcttactgccatccaggtgaaaagtcatctagatagaagactattcctaatatcc 624

                                                                       
Query: 425 cacctccctctgattttcattcttctttaaagaaggtcagagaatcaaataaaatgctgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacctccctctgattttcattcttctttaaagaaggtcagagaatcaaataaaatgctgc 684

                                                                       
Query: 485 aaatatgctgtcagagatgggagcaaggggtgggaaaaaattcacctttatcacagatgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaatatgctgtcagagatgggagcaaggggtgggaaaaaattcacctttatcacagatgg 744

                                                                       
Query: 545 aaaaatcatgaccacagatttgaagcacagatagacacattaaagactgaagttaataag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaaaatcatgaccacagatttgaagcacagatagacacattaaagactgaagttaataag 804

                                                                       
Query: 605 aaatttatataacaaatatattggcctttccctaagaactttgtacaacaaagaactcca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaatttatataacaaatatattggcctttccctaagaactttgtacaacaaagaactcca 864

                                    
Query: 665 gagtgtaatagtagtcaaaacctta 689
           |||||||||||||||||||||||||
Sbjct: 865 gagtgtaatagtagtcaaaacctta 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)