Query= MSMg01no545_h24.b1 MSMg01no545_h24.b1 CHROMAT_FILE:
MSMg01no545_h24.b1 PHD_FILE: MSMg01no545_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:29 2005
(594 letters)
>mm_chr18_62865588_62866581
Length = 994
Score = 899 bits (465), Expect = 0.0
Identities = 542/599 (90%), Gaps = 54/599 (9%)
Strand = Plus / Plus
Query: 4 ggaattccacctaatc-tcatgagaccacactctttctatctggcattgacaaagatttg 62
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggaattccacctaatcat-atgagaccacactctttctatctggcattgacaaagatttg 306
Query: 63 agaactgtagttctgtcctatcattcattcattcattcattcattcattcattcatgtat 122
|||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 307 agaactgtagttctgtccta------------tcattcattcattcattcattcatgtat 354
Query: 123 caattcattcatccatccattcactcattcacttatttattcagtcactcatttattcac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 caattcattcatccatccattcactcattcacttatttattcagtcactcatttattcac 414
Query: 183 tcactcactcattcagtcattcacttactcactaattcattcactcactaattcattcat 242
|||||||||||||||||||||||||||||||||| ||
Sbjct: 415 tcactcactcattcagtcattcacttactcacta------------------------at 450
Query: 243 tcattcattcattcattcacttacccattcattcattcactcattcacttattcatttac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tcattcattcattcattcacttacccattcattcattcactcattcacttattcatttac 510
Query: 303 ttattccatcactcatttattcactcactcattcagtcattcacttactcactaattcat 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 511 ttattccatcactcatttattcactcactcattcagtcattcacttactcacta----at 566
Query: 363 tcattcactcattcattcattcattcattcactcacacatccatccattaatttattcac 422
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tcattcac----tcattcattcattcattcactcacacatccatccattaatttattcac 622
Query: 423 tcacttgttcattcatctacttatccattcatccaaatacattattagcaatgtccttgt 482
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcactcattcattcatctacttatccattcatccaaatacattattagcaatgtccttgt 682
Query: 483 tccacataccaaagttaagacattgtaactgtcattaccaacaactgtagagaaatattt 542
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 683 tccacataccaaagttaagacattgtaactgtccttaccaacaactgtagagaaatattt 742
Query: 543 aaagagcacacatagtgtttaaataagtgctttgggcttt--------tagacttcaga 593
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 743 aaagagcacacatagtgtttaaataagtgctttgggctttggtagagctagacttcaga 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 157
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_h24.g1 MSMg01no545_h24.g1 CHROMAT_FILE:
MSMg01no545_h24.g1 PHD_FILE: MSMg01no545_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:29 2005
(540 letters)
>mm_chr18_62927108_62928045
Length = 938
Score = 1013 bits (524), Expect = 0.0
Identities = 534/538 (99%), Gaps = 2/538 (0%)
Strand = Plus / Minus
Query: 1 tatgggtccataaatacccttaacctcaaagcattaacaatttctggaagtctttgcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tatgggtccataaatacccttaacctcaaagcattaacaatttctggaagtctttgcctg 677
Query: 61 gaaacagaagatgaatacaatgacattaaaaaaaaaataagtaggtggtgacatcttgcc 120
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 676 gaaacagaagatgaatacaatgacatt--aaaaaaaataagtaggtggtgacatcttgcc 619
Query: 121 taatgtgcctaagacccggtacaaagagaaatccaaagagacgacatcttcagttacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 taatgtgcctaagacccggtacaaagagaaatccaaagagacgacatcttcagttacaga 559
Query: 181 ctgtacaggtgtgcgcacagatgtgcacgcagatgcgcacacagaaaacaaaagctgtac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctgtacaggtgtgcgcacagatgtgcacgcagatgcgcacacagaaaacaaaagctgtac 499
Query: 241 tgttaactaaacaaatcagggcaatgcctcgtcagatctgctcattgaagatacggaacc 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgttaactaaacaaatcagggcgatgcctcgtcagatctgctcattgaagatacggaacc 439
Query: 301 cagtgggcttagctgagaagcaaaggagttcacagatgcctcagatcccactgcagggac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cagtgggcttagctgagaagcaaaggagttcacagatgcctcagatcccactgcagggac 379
Query: 361 agatgctaaggacactgggtcctagagaccagcctccctgagcttgtccacaggctgacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agatgctaaggacactgggtcctagagaccagcctccctgagcttgtccacaggctgacg 319
Query: 421 ctgatgtcctcttcctatgacacttgattcaaattcaaagtccaggctggattctgatga 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctgatgttctcttcctatgacacttgattcaaattcaaagtccaggctggattctgatga 259
Query: 481 tgtttcctatagctcctgggagggtagggtcagtgttctctatttgtgccttctgagt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgtttcctatagctcctgggagggtagggtcagtgttctctatttgtgccttctgagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 938
Length adjustment: 10
Effective length of query: 530
Effective length of database: 928
Effective search space: 491840
Effective search space used: 491840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
