Query= MSMg01no545_k15.b1 MSMg01no545_k15.b1 CHROMAT_FILE:
MSMg01no545_k15.b1 PHD_FILE: MSMg01no545_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:42 2005
(594 letters)
>mm_chr18_60656426_60657419
Length = 994
Score = 1091 bits (564), Expect = 0.0
Identities = 584/592 (98%), Gaps = 4/592 (0%)
Strand = Plus / Plus
Query: 5 gaattcaagtgtcttca--gctgccagacttaagtctcatgaactggattagaaggattt 62
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtgtc--caaagctgccagacttaagtctcatgaactggattagaaggattt 262
Query: 63 ggggtttgggttggtttggttaggtgttgttgtttacttattctttacatttttatttat 122
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 ggggtttgggttggtttggttaggtgttgttgtttacttattctttacatttgtatttat 322
Query: 123 tgttagaggacggaggtactgtgtgtgtgccacagtctagcacacacggtgggtaataag 182
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgttagaggacggagggactgtgtgtgtgccacagtctagcacacacggtgggtaataag 382
Query: 183 cagctctggggcctctgtcctctcctcccgccatgggtttctagactcagtctcagatca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagctctggggcctctgtcctctcctcccgccatgggtttctagactcagtctcagatca 442
Query: 243 tcaggcacgcatggcaaatgcctttaccaactgaaccatctggccagccctgttttctat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcaggcacgcatggcaaatgcctttaccaactgaaccatctggccagccctgttttctat 502
Query: 303 tttacttttaatgttgtatgtatgtgcacaggtttgcaactatgcatgcaaacgtgtaca 362
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 503 tttacttttaatgttgtatgtatgtgcacaggtttgcaactatgcacgcaaacgtgtaca 562
Query: 363 catgccagcaaacctcagggatccacctgtctccacctccccagtgctgaacttataagc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 catgccagcaaacctcagggatccacctgtctccacctccccagtgctgaacttataagc 622
Query: 423 aagcgccaccctgccggcctttcccgcatgctccgggaatcagactcaagccctcatgct 482
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagcgccatcctgccggcctttcccgcatgctccgggaatcagactcaagccctcatgct 682
Query: 483 tgcccctctgggagctctctccccagcccactatgcagcaaattattaatggtgcaggac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgcccctctgggagctctctccccagcccactatgcagcaaattattaatggtgcaggac 742
Query: 543 tagatcctaagtaaagtcctctttctgattgcacctcagtttgggtatcagt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tagatcctaagtaaagtcctctttctgattgcacctcagtttgggtatcagt 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_k15.g1 MSMg01no545_k15.g1 CHROMAT_FILE:
MSMg01no545_k15.g1 PHD_FILE: MSMg01no545_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:42 2005
(480 letters)
>mm_chr18_60821520_60822399
Length = 880
Score = 731 bits (378), Expect = 0.0
Identities = 384/386 (99%)
Strand = Plus / Minus
Query: 1 ctcgacgcaaaactgccaaaccagccaagcttatacgtgcagccttccatcctcagccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctcgacgcaaaactgccaaaccagccaagcttatacgtgcagccttccatcctcagccct 527
Query: 61 ggggctttgtggttcaatacctaccatgtcccagttgcagctctggaagagtgtggctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggggctttgtggttcaatacctaccatgtcccagttgcagctctggaagagtgtggctgc 467
Query: 121 tggctgaggtggcaaagtcctacctggggctgggggaggcccagaaacacatgccttcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tggctgaggtggcaaagtcctacctggggctgggggaggcccagaaacacatgccttcca 407
Query: 181 ctgttctccaggagcccagagtgtggggaagtcctgggcactgaagacactatgaatcat 240
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 406 ctgttctccaggagcccacagtgtggggaagtcctgggcaccgaagacactatgaatcat 347
Query: 241 tttggtttacactttccctattggaacccggggagctgatgtcacaattctccttggttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tttggtttacactttccctattggaacccggggagctgatgtcacaattctccttggttc 287
Query: 301 acgcagtctccatgatggggttttcttgacaatctggtctggcctgcagggactctatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 acgcagtctccatgatggggttttcttgacaatctggtctggcctgcagggactctatag 227
Query: 361 gcatcggactatggtgggcacaaggc 386
||||||||||||||||||||||||||
Sbjct: 226 gcatcggactatggtgggcacaaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
