Query= MSMg01no545_m12.b1 MSMg01no545_m12.b1 CHROMAT_FILE:
MSMg01no545_m12.b1 PHD_FILE: MSMg01no545_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:51 2005
(269 letters)
>mm_chr18_51450290_51450958
Length = 669
Score = 489 bits (253), Expect = e-143
Identities = 265/269 (98%)
Strand = Plus / Minus
Query: 1 atcccattgcatagtgctagaactccttccctcatatgtaccattgtgtgatatagtgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atcccattgcatagtgctagaactccttccctcatatgtaccattgtgtgatatagtgat 410
Query: 61 taattgtttaataagccttcttatttttcttgtgaaagtttactgtctgaaaaatgaatc 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 409 taattgtttaataagccttcttatttttcttatgaaagtttactgtctgaaaaatgaatc 350
Query: 121 cgatgcttttagagatggaacaaaaaatatatactaaatacataaatatcaaaataaatg 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 349 cgatgcttttagagatggaacaaagaatatatactaaatacataaatatcaaaataaatg 290
Query: 181 aaacagggcaaaatacaaacaaagcatggtgtcaacaaaattgctgctacttcttttttt 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaacagggaaaaatacaaacaaagcatggtgtcaacaaaattgctgctacttcttttttt 230
Query: 241 tttcagttctgaatacatctataaatttc 269
|| ||||||||||||||||||||||||||
Sbjct: 229 ttccagttctgaatacatctataaatttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no545_m12.g1 MSMg01no545_m12.g1 CHROMAT_FILE:
MSMg01no545_m12.g1 PHD_FILE: MSMg01no545_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:51 2005
(401 letters)
>mm_chr18_51308615_51309415
Length = 801
Score = 654 bits (338), Expect = 0.0
Identities = 395/434 (91%), Gaps = 33/434 (7%)
Strand = Plus / Plus
Query: 1 tctgcctctgttttcagattcacttgatgggaacaagcagtttcacattcttgttgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tctgcctctgttttcagattcacttgatgggaacaagcagtttcacattcttgttgtcaa 227
Query: 61 gctatgagccacttcttttgtcatgttttcctagccttggtggactacattaaggaacaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 228 gctatgagccacttcttttgtcatgttttcctagccttggtggactacattaaggaacga 287
Query: 121 ctcaaaatgaacaatacctctcaactttcttctcttccttcctaaggtttcagtgatgat 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 288 ctcaaaatgaacaatacctctcaaatttcttctcttccttcctaaggtttcagtgatgat 347
Query: 181 tgagcttcctaccacacatattctcaaaccatagaactttagaacaaagtttttaat--- 237
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 348 tgagcttcctaccacacatattctcaaaccatagaactttagagcaaagtttttaatgag 407
Query: 238 ----aa---gagttaataccctgcaatta-----------------------gggctcca 267
|| |||||||||||||||||||| ||||||||
Sbjct: 408 agttaatgagagttaataccctgcaattaatcctgtatagtattaaatgttagggctcca 467
Query: 268 actcaaggcactttcatcatatacataagtataaggtgcatatatacttatgcctatgcc 327
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 468 actcaaggcactttcatcatatacataagtataaggtgcatatacacttatgcatatgcc 527
Query: 328 aatactttcaaagataaatggcattaacattatttctacttatctatgttcagaaaatat 387
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 528 aatactttcaaagataaatggcgttaacattatttctacttatctatgttcagaaaatat 587
Query: 388 ttattaaattgaaa 401
||||||||||||||
Sbjct: 588 ttattaaattgaaa 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
