Query= MSMg01no546_g20.b1 MSMg01no546_g20.b1 CHROMAT_FILE:
MSMg01no546_g20.b1 PHD_FILE: MSMg01no546_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:43 2005
(717 letters)
>mm_chr18_55401543_55402661
Length = 1119
Score = 1328 bits (687), Expect = 0.0
Identities = 697/701 (99%), Gaps = 2/701 (0%)
Strand = Plus / Minus
Query: 18 acttataatcatggctatggtttcttacttacatcaaaaggacattttttaaaaagaaga 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 acttataatcatggctatggtttcttacttacatcaaaaggacattttttaaaaagaaga 1060
Query: 78 cgataaaaaggatgcagacagcagaaaccaggtcaaaacatctatgaaatcacaaggaca 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 cgataaaaaggatgcagacagcagaaaccaggtcaaaacatctatgaaatcacaaggaca 1000
Query: 138 cactcctgtaacactgagccctgacaacactgtgaagggctgtctaccaggaaagctctt 197
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 999 cactcctgtaacactgagccctgacaacactgtgaagggctgtctaccagaaaagctctt 940
Query: 198 tagaacccctgtgtccagtgttctttacttggtactggacattaggtcaccctctgccta 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 tagaacccctgtgtccagtgttctttacttggtactggacattaggtcaccctctgccta 880
Query: 258 ggacaggcaaagaaaaaaggcaagcctttagcatatgccacacagcgcttctgaattcaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ggacaggcaaagaaaaaaggcaagcctttagcatatgccacacagcgcttctgaattcaa 820
Query: 318 acttttgagataacatgcatcatcagctcaaggtgaccttacaaacaggtatttggaaac 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 acttttgagataacatgcatcatcagctcaaggtgaccttacaaacaggtatttggaaac 760
Query: 378 acagcaaactcac--gcctccatagtcttggaaaaacttctcactgttctgtatcattgg 435
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 acagcaaactcacgtgcctccatagtcttggaaaaacttctcactgttctgtatcattgg 700
Query: 436 gggactcccccactgtgagatcacaccctcatcctagagatgccatttgattccatttga 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gggactcccccactgtgagatcacaccctcatcctagagatgccatttgattccatttga 640
Query: 496 taccacaaaactatttactttggtttagaaaaaaaaatagaaaagcaacccctcagtttg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 taccacaaaactatttactttggtttagaaaaaaaaatagaaaagcaacccctcagtttg 580
Query: 556 ggactgagaaaggagaatggtctgaactgtgacacacctcaacaatgaatttgaaataaa 615
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 579 ggactgagaaaggagaatggtctgaactgtgacacacctcaacaatgaatctgaaataaa 520
Query: 616 atacaagcaagtatccaccatcttagtttggtttctattgctttgatcaagagcaccacc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atacaagcaagtatccaccatcttagtttggtttctattgctttgatcaagagcaccacc 460
Query: 676 aaaagcaacttcaggaggaaagggtatatttggcttccata 716
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaaagcaacttcaggaggaaagggtatatttggcttccata 419
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1119
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1109
Effective search space: 784063
Effective search space used: 784063
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no546_g20.g1 MSMg01no546_g20.g1 CHROMAT_FILE:
MSMg01no546_g20.g1 PHD_FILE: MSMg01no546_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:43 2005
(674 letters)
>mm_chr18_55245358_55246431
Length = 1074
Score = 1183 bits (612), Expect = 0.0
Identities = 659/675 (97%), Gaps = 2/675 (0%)
Strand = Plus / Plus
Query: 1 ccagatgctgttctctccgctcaaacttttcactcagcatcagctcagctaactctgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagatgctgttctctccgctcaaacttttcactcagcatcagctcagctaactctgaga 260
Query: 61 gttattgtctcatgtatggatgtgaatggagatgaatatgtgtgttttcacatgcatgac 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttatcgtctcatgtatggatgtgaatggagatgaatatgtgtgttttcacatgcatgac 320
Query: 121 tgtgaatggagaaaaccatgtgtgttttttactttttgtagccatgactaaaatgtctag 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tgtgaatggagaaaaccatgtgtgttttttactttttgtggccatgactaaaatgtctag 380
Query: 181 aagaaacaaggggaaaacctatttcgtctcctgatttgatccctggccattggtcccagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaacaaggggaaaacctatttcgtctcctgatttgatccctggccattggtcccagt 440
Query: 241 ctactgagaaaggtgtca-aatgtttgggagaactggccaatggaaacaaaggtaaagga 299
|||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctactgaggcaggtgt-agaatgtttgggagaactggccaatggaaacaaaggtaaagga 499
Query: 300 gaacgcaggcacaccgctgacactttattttttcttttgctctctccattctgtcctgtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 500 gaacgcaggcacaccgctgacactttattttttcttttgctctctccattctgtcctatg 559
Query: 360 caggcaggtcaactatcccatgaaacagtgtcgcaggctttcgtgctggatccctttctt 419
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 560 caggcaggtcaactatcccatgaaacagtgccgcaggctttcatgctggatccctttctt 619
Query: 420 ggttaatcctctctggaatgccctccacagacacacctggaggtgtgcctcatcatttcc 479
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 ggttaatcttctctggaatgccctccacagacacacctggaggtgcgcctcatcatttcc 679
Query: 480 taagcacctctaactccagttcgggtccaccagtaggattaactatcccaatagacaaca 539
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 680 taagcacctcgaactccagttcgggtcgaccagtaggattaactatcccaatagacaaca 739
Query: 540 cgtaaataagtctcaatatattgtgggacaggaggcaataaacatcactgggaaagaaga 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cgtaaataagtctcaatacattgtgggacaggaggcaataaacatcactgggaaagaaga 799
Query: 600 aaggtccagaagaataaagagacnagagtgcctggtgaataacttgtggtgatgaatgga 659
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 800 aaggtccagaagaataaagagacaagagtgcctggagaataacttgtggtgatgaatgga 859
Query: 660 ttagataaagtgaca 674
|||||||||||||||
Sbjct: 860 ttagataaagtgaca 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
