Query= MSMg01no546_h19.b1 MSMg01no546_h19.b1 CHROMAT_FILE:
MSMg01no546_h19.b1 PHD_FILE: MSMg01no546_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:48 2005
(527 letters)
>mm_chr18_72863358_72864284
Length = 927
Score = 1013 bits (524), Expect = 0.0
Identities = 527/528 (99%), Gaps = 1/528 (0%)
Strand = Plus / Plus
Query: 1 aatggataaaaagaacatgtgatgagcaggggttcatggcaggagttggggagagagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatggataaaaagaacatgtgatgagcaggggttcatggcaggagttggggagagagatg 260
Query: 61 tgaaggaaagacatgatgaagatacactgtataatgtataaaaatttcaagaataaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaggaaagacatgatgaagatacactgtataatgtataaaaatttcaagaataaataa 320
Query: 121 aatgaaaaatcaatatactcaagacaaagtcaaaaagaaacaatgtacttggaggatgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaaaaatcaatatactcaagacaaagtcaaaaagaaacaatgtacttggaggatgat 380
Query: 181 gtacatgcatgaaggtcattttgaaattttatgatttattcagaatcattactagctcgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacatgcatgaaggtcattttgaaattttatgatttattcagaatcattactagctcgg 440
Query: 241 taaaaattcatctcaaattgagaagtttccaaatatatatcatcattgtaggtattggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaaattcatctcaaattgagaagtttccaaatatatatcatcattgtaggtattggaa 500
Query: 301 tcatgagaaaacggtgtgctcatgtgcagttggaaaaaaaa-tgtgaagaaatcttatgt 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tcatgagaaaacggtgtgctcatgtgcagttggaaaaaaaaatgtgaagaaatcttatgt 560
Query: 360 cccctgtaccttgtcagttctaatggtaatatatttaaaagcagcccatttcagaaagtt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccctgtaccttgtcagttctaatggtaatatatttaaaagcagcccatttcagaaagtt 620
Query: 420 gggtgttcacatagatacaggagacacacagaactctttgaagaaaagatccccatcttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggtgttcacatagatacaggagacacacagaactctttgaagaaaagatccccatcttg 680
Query: 480 ctttttcttagtctcatccattcctcttcctcccctctgttactcact 527
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttttcttagtctcatccattcctcttcctcccctctgttactcact 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_h19.g1 MSMg01no546_h19.g1 CHROMAT_FILE:
MSMg01no546_h19.g1 PHD_FILE: MSMg01no546_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:48 2005
(562 letters)
>mm_chr18_73054933_73055895
Length = 963
Score = 1007 bits (521), Expect = 0.0
Identities = 551/563 (97%), Gaps = 7/563 (1%)
Strand = Plus / Minus
Query: 1 aagagaggatctcagtggcctctgaagttagctgaaggaga---cttcttcttctgtaca 57
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 726 aagagaggatctcagtggcctctgaagttagctgaaggagacttcttcttcttctgtaca 667
Query: 58 aatgcagcgcccatgaatcgctggcatatgagcagaaagagggtgaaaggaagcaatatg 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 666 aatgcagcgcccatgaatcgctggcatatgagcagaaagagggtgaaaggaagcaa-atg 608
Query: 118 tcatgattttttagaaggtggtccttgtaataatatcacacagcattatagaagataaga 177
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 607 tcatga-tttttagaaggtggtccttgtaataatatcacatagcattatagaagataaga 549
Query: 178 tcttccgctgtacttagccaatgtgtgtgaacgtattagtaaccatatagaaaactgagg 237
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 548 tcttccgctgtacttagccaatgtgtgtgaccgtattagtaaccatatagaaaactgagg 489
Query: 238 actctatttgtctctagagatatgagatagcttctggaaaggaaatacactttttctatt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 actctatttgtctctagagatatgagatagcttctggaaaggaaatacactttttctatt 429
Query: 298 cctataaactagatataatggacctaatgggcttgtttcttaggatagtgatcttactaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cctataaactagatataatggacctaatgggcttgtttcttaggatagtgatcttactaa 369
Query: 358 ttgcaccttcagtgagtaaaccaaagaactcattgctctgaggtaaaaagttttctgcta 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttgcaccttcagtgagtaaaccaaagaactcattgctctgaggtaaaaagttttctgctc 309
Query: 418 tattgaattcaagtagaacaaacaatagaatcagagaaaggaactcagacaaagaaggat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tattgaattcaagtagaacaaacaatagaatcagagaaaggaactcagacaaagaaggat 249
Query: 478 ggtatataaggcaggtaatgttacattaaaaaatagacagccagaatcgagagagagag- 536
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 248 ggtatataaggcaggcaatgttacattaaaaaatagacagccagaatccagagagagagg 189
Query: 537 -agggagggagggagggagagag 558
||||||||||||||||||||||
Sbjct: 188 gagggagggagggagggagagag 166
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 963
Length adjustment: 10
Effective length of query: 552
Effective length of database: 953
Effective search space: 526056
Effective search space used: 526056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
