Query= MSMg01no546_o23.b1 MSMg01no546_o23.b1 CHROMAT_FILE:
MSMg01no546_o23.b1 PHD_FILE: MSMg01no546_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:24 2005
(619 letters)
>mm_chr18_20508226_20509243
Length = 1018
Score = 1075 bits (556), Expect = 0.0
Identities = 595/608 (97%), Gaps = 3/608 (0%)
Strand = Plus / Plus
Query: 13 gaattcaattcaagggaggcctggagtctggttctctgggaagactgtcctgtgaagcct 72
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 213 gaattcaattcaagggaggcctggagtctggttccctgggaagactgtcctgtgaagcct 272
Query: 73 tcaagcttctttctctgaagcaaggacacgggacaagagtctcagaagagacatgatgtg 132
|||||||||| ||||||||||||||||| ||||||||| |||||||||| || |||||||
Sbjct: 273 tcaagcttctctctctgaagcaaggacaagggacaagattctcagaagacacgtgatgtg 332
Query: 133 ctttataggtcagtacagccaagaacaggttaaaactgaataaaatctcaggtgaaaact 192
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 333 ctttataggtcagtacagccaagaacaggttaaaaccgaataaaatctcaggtgaaaact 392
Query: 193 atcaggaaggagatgctatgagtaagaataaaaattaagaaataaaacctacatttactt 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atcaggaaggagatgctatgagtaagaataaaaattaagaaataaaacctacatttactt 452
Query: 253 actatcattcaaaatatattaatgtgtagtaaaacaacatatctgtccctagtgccaaag 312
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 actaccattcaaaatatattaatgtgtagtaaaacaacatatctgtccctagtgccaaag 512
Query: 313 accttaacaaatatgaaatatattaaaggttagacaaactagaaagttgaaaagaattac 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 accttaacaaatatgaaatatattaaaggttagacaaactagaaagttgaaaagaattac 572
Query: 373 tgctcagaggaggatctaatgtctcctagctttgttacataaatatgtctaacttaacct 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgctcagaggaggatctaatgtctcctagctttgttacataaatatgtctaacttaacct 632
Query: 433 cccaggaaataatagaagaaatttgtaattaagagcaactaatgagcttactaggaaaaa 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cccaggaaataatagaagaaatttgtaattaagagcaactaatgagcttactaggaaaaa 692
Query: 493 aaacagagcaaatgagtggtactggtagaaccagatttaaatgtcacttaaccctgctgt 552
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aa-cagagcaaatgaatggtactggtagaaccagatttaaatgtcacttaaccctgctgt 751
Query: 553 aacactggcatagcatacttaacttcagacaaggatctactctganca-ctgtcaacaaa 611
| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 752 agcactggcatagcatacttaacttcagacaaggatctactctga-caactgtcaacaaa 810
Query: 612 cagaaata 619
||||||||
Sbjct: 811 cagaaata 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1018
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1008
Effective search space: 613872
Effective search space used: 613872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_o23.g1 MSMg01no546_o23.g1 CHROMAT_FILE:
MSMg01no546_o23.g1 PHD_FILE: MSMg01no546_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:24 2005
(561 letters)
>mm_chr18_20644341_20645301
Length = 961
Score = 1031 bits (533), Expect = 0.0
Identities = 554/561 (98%)
Strand = Plus / Minus
Query: 1 caggccaaccaaggctatgtagagagatcctgcctaaaaatgtttgtgtgtgcatgtgtg 60
|||||| | ||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 761 caggcccagcaaggctatgtagcgatatcctgcctaaaaatgtttgtgtgtgcatgtgtg 702
Query: 61 tgttaatataaattgatgaagaaatatgtacctccagttcatggctttttctccatgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgttaatataaattgatgaagaaatatgtacctccagttcatggctttttctccatgcag 642
Query: 121 atgaatattttcccaaggaacaaatactgtagcccctggtggatgcagctctcaaaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 atgaatattttcccaaggaacaaatactgtagcccctggtggatgcagctctcaaaagac 582
Query: 181 tcatttttataaatttttctcttgcatctcagggtttagtgcttcctgacttccccagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tcatttttataaatttttctcttgcatctcagggtttagtgcttcctgacttccccagtg 522
Query: 241 cttcctggcatgagagattctttgtaacaatcttacctggtttcataaagaacattagtg 300
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 521 cttcctggcaggagagattctttgtaacaatcttacctggtttcaaaaagaacattagtg 462
Query: 301 acttgctggagaattgcagagcttcaaagtgtacaggtagaatttgaatcttagaatctc 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 461 acttgctggagaattgcagagcttcaaagtatacaggtagaatttgaatcttagaatctc 402
Query: 361 ttccctcatctctgataggttgataatgtatttttatctattctctttcagagaaaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttccctcatctctgataggttgataatgtatttttatctattctctttcagagaaaaaaa 342
Query: 421 ttaatctaagaattgattacatcaatccaattcaaccatcaaacattcactccataagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttaatctaagaattgattacatcaatccaattcaaccatcaaacattcactccataagaa 282
Query: 481 ctttccaaatatctgaaggtgtggacacagcttgtacctcaagatacaagggcagagact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctttccaaatatctgaaggtgtggacacagcttgtacctcaagatacaagggcagagact 222
Query: 541 gtgttacaatcttgcatctgg 561
|||||||||||||||||||||
Sbjct: 221 gtgttacaatcttgcatctgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
