BAC Information

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BAC

Clone NameMSMg01-547C02
Chromosome18 (Build37)
Map Location 22,003,243 - 22,126,803
singlet/doubletdoublet
Overlap gene4921528I01Rik
Upstream geneD030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14
Downstream geneLOC546708, LOC100040547, Asxl3, Nol4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547C02.T7 (MSMg01no547_c02.b1)MSMg01-547C02.TJ (MSMg01no547_c02.g1)
ACCAG611791AG611792
length755754
length of high quality
(start - end)		710 (33 - 742)568 (59 - 626)
definitionCHROMAT_FILE: MSMg01no547_c02.b1 PHD_FILE: MSMg01no547_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:40 2005CHROMAT_FILE: MSMg01no547_c02.g1 PHD_FILE: MSMg01no547_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,126,157 - 22,126,803)(22,003,243 - 22,003,810)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGTGTTT
ATTGTGTGTACAGAGTAAGACCACAGGAAAGCTCCCAGATACAGATAGCA
AGCACTACCAGAAAGACCACACATTTATAACTTGTTGAATATATGTAACT
GTTGGTTATTGCATGCCCCAAGCCTTTTCCTTTTGCCTGCTCATAATCCC
TATCGTTAGCTACACAACTCCATATGAAATGATAACGAATACTTAGGTAT
GGCATACGTAGTTAATACTGCACCTAGATCCAGATGGAATGAGAGCACAG
GTCCCAGTCATCTCACCAGCTTCATTACACTCCATTTTCAATTGGAAAAT
GAGACAGGATAAAAGCAACAAATACATTCCAGAAAGAGAAATTAAGGGAA
GGCTCACATGTCCAGTAGCTTTTGGTTATCAGCAAGTCTGTGTGGACATT
TTGTCAGACCTGGAAGTAGGAAACTATTGCCCGAGCTTTTGTCCCCACCA
GCAAGAACACACTCAGGACAACCGGAATCTTCTGCGGCAAAAGGCTTTAT
TGCTTACTTCTCAGGAGGAAGATCCCAAACCCAGAAAATGGTGCTGCTTA
TATAGCCCGCAGCGTGACGTTTCAGCATCTGATGTGGCGTGACAGCTCCT
GATTCGTTGCTCGCCCATCACCCCATTACTACGCCCCGAAATGGGCAGTG
AGTGACTAGGCGTGAGTTCACTCTTGCACTTGTGCGTAAGGCTTGTTTAC
TAGTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXATCCTTCATGCAATCCCAGTCTATCAAAGAGGTTAAAAATTT
ATAAAACTCTGATGGGATATGGTTTCAATGCTTCATCACACAGCCCATCA
TTTGCTTTCCAATCTAGATCAGAATAATCTTGCCTCTTTCCCTTCAGTCA
CCTACCTGCACAGCTAATATTTTCTGAATGCTGTTCTGGGAGTCTCCCTG
GAACTTGGCCAGCTTGGTCTTGTTAAAAAGGATCATCAGTCGGAAGTATT
CTTGCCATTTCTGGTCCAGCCTTTTTTGCAGCTGACAGAGCTAAAGGCGA
CAGGGAGAGGAAAAAACACGCAAGTCAGGGGAGGAGAGGAAATTAATGGC
ACCGTTCAAGAAGAATGATGGAGGGAAATATAGAAAGCAGCCAATGGCCC
GTTCCGCACTGTACGGACCTGACAGGAATTTCACAGTCTCTTGATTTTTC
AGCCTGCTCATGTGCATTCGTCGGAGACCAGTCACATCTGGCCGCCAGGA
TGGGGGGTTAATTTTCTCTAAATGCCTCAGCAGTTTTGTTCTAGCTGAAG
CAAACTCTGTGACTGCAAAGCTGATGAGTAAAATATTTCTACTTCACCCA
GTTTAACTCAAAACCGATAGCCTCAGGACATATTGAACCCTTTCTGTTAA
AAAAAAAATCTCTTGACGCTTTTTGAATGGCACATCGGGTCAAGCCAAAG
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_c02.b1 MSMg01no547_c02.b1 CHROMAT_FILE:
MSMg01no547_c02.b1 PHD_FILE: MSMg01no547_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:40 2005
         (710 letters)



>mm_chr18_22126157_22127266
          Length = 1110

 Score = 1236 bits (639), Expect = 0.0
 Identities = 645/647 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtgtttattgtgtgtacagagtaagaccacaggaaagctcccagatacagat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gaattcatgtgtttattgtgtgtacagagtaagaccacaggaaagctcccagatacagat 588

                                                                       
Query: 65  agcaagcactaccagaaagaccacacatttataacttgttgaatatatgtaactgttggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agcaagcactaccagaaagaccacacatttataacttgttgaatatatgtaactgttggt 528

                                                                       
Query: 125 tattgcatgccccaagccttttccttttgcctgctcataatccctatcgttagctacaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tattgcatgccccaagccttttccttttgcctgctcataatccctatcgttagctacaca 468

                                                                       
Query: 185 actccatatgaaatgataacgaatacttaggtatggcatacgtagttaatactgcaccta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 actccatatgaaatgataacgaatacttaggtatggcatacgtagttaatactgcaccta 408

                                                                       
Query: 245 gatccagatggaatgagagcacaggtcccagtcatctcaccagcttcattacactccatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gatccagatggaatgagagcacaggtcccagtcatctcaccagcttcattacactccatt 348

                                                                       
Query: 305 ttcaattggaaaatgagacaggataaaagcaacaaatacattccagaaagagaaattaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttcaattggaaaatgagacaggataaaagcaacaaatacattccagaaagagaaattaag 288

                                                                       
Query: 365 ggaaggctcacatgtccagtagcttttggttatcagcaagtctgtgtggacattttgtca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggaaggctcacatgtccagtagcttttggttatcagcaagtctgtgtggacattttgtca 228

                                                                       
Query: 425 gacctggaagtaggaaactattgcccgagcttttgtccccaccagcaagaacacactcag 484
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 227 gacctggaagtaggaaactattgcccgagcttttgtccccaccggcaagaacacactcag 168

                                                                       
Query: 485 gacaaccggaatcttctgcggcaaaaggctttattgcttacttctcaggaggaagatccc 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 167 gacaaccggaatcttctgcggcaaaaggctttattgcttacttctcaggaggaagacccc 108

                                                                       
Query: 545 aaacccagaaaatggtgctgcttatatagcccgcagcgtgacgtttcagcatctgatgtg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 aaacccagaaaatggtgctgcttatatagcccgcagcgtgacgtttcagcatctgatgtg 48

                                                          
Query: 605 gcgtgacagctcctgattcgttgctcgcccatcaccccattactacg 651
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  gcgtgacagctcctgattcgttgctcgcccatcaccccattactacg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space:   770000
Effective search space used:   770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no547_c02.g1 MSMg01no547_c02.g1 CHROMAT_FILE:
MSMg01no547_c02.g1 PHD_FILE: MSMg01no547_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:40 2005
         (568 letters)



>mm_chr18_22003043_22004010
          Length = 968

 Score = 1091 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccttcatgcaatcccagtctatcaaagaggttaaaaatttataaaactctgatgggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccttcatgcaatcccagtctatcaaagaggttaaaaatttataaaactctgatgggat 260

                                                                       
Query: 61  atggtttcaatgcttcatcacacagcccatcatttgctttccaatctagatcagaataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggtttcaatgcttcatcacacagcccatcatttgctttccaatctagatcagaataat 320

                                                                       
Query: 121 cttgcctctttcccttcagtcacctacctgcacagctaatattttctgaatgctgttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgcctctttcccttcagtcacctacctgcacagctaatattttctgaatgctgttctg 380

                                                                       
Query: 181 ggagtctccctggaacttggccagcttggtcttgttaaaaaggatcatcagtcggaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagtctccctggaacttggccagcttggtcttgttaaaaaggatcatcagtcggaagta 440

                                                                       
Query: 241 ttcttgccatttctggtccagccttttttgcagctgacagagctaaaggcgacagggaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttgccatttctggtccagccttttttgcagctgacagagctaaaggcgacagggaga 500

                                                                       
Query: 301 ggaaaaaacacgcaagtcaggggaggagaggaaattaatggcaccgttcaagaagaatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaaaaaacacgcaagtcaggggaggagaggaaattaatggcaccgttcaagaagaatga 560

                                                                       
Query: 361 tggagggaaatatagaaagcagccaatggcccgttccgcactgtacggacctgacaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tggagggaaatatagaaagcagccaatggcccgttccgcactgtatggacctgacaggaa 620

                                                                       
Query: 421 tttcacagtctcttgatttttcagcctgctcatgtgcattcgtcggagaccagtcacatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcacagtctcttgatttttcagcctgctcatgtgcattcgtcggagaccagtcacatc 680

                                                                       
Query: 481 tggccgccaggatggggggttaattttctctaaatgcctcagcagttttgttctagctga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggccgccaggatggggggttaattttctctaaatgcctcagcagttttgttctagctga 740

                                       
Query: 541 agcaaactctgtgactgcaaagctgatg 568
           ||||||||||||||||||||||||||||
Sbjct: 741 agcaaactctgtgactgcaaagctgatg 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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