Query= MSMg01no547_d09.b1 MSMg01no547_d09.b1 CHROMAT_FILE:
MSMg01no547_d09.b1 PHD_FILE: MSMg01no547_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:47 2005
(684 letters)
>mm_chr18_68146716_68147799
Length = 1084
Score = 553 bits (286), Expect = e-161
Identities = 307/314 (97%), Gaps = 1/314 (0%)
Strand = Plus / Minus
Query: 372 acatactagataccttctgagccacgttcattgctgctctgtccacaagagctaggaaac 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 acatactagataccttctgagccacgttcattgctgctctgtccacaagagctaggaaac 1025
Query: 432 agaatcagccgagatgtccctcaactaatggatatgaaaatgtggtacacgtactctatg 491
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1024 agaatcagccgagatgtccctcaactaatggatacgaaaatgtggtacacatactctatg 965
Query: 492 gaattttactgaagaattcagggggaaggagggagctggaaataacctaagcgact-taa 550
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 964 gaattttactgaagagttcagggggaaggagggagctggaaataacctaagcgactgtaa 905
Query: 551 cccagacccaggaagacaatagatgatgcaaatcacagcttggaatctttagatttgtgt 610
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 cccagacccaggaagacaacagatgatgcaaatcacagcttggaatctttagatttgtgt 845
Query: 611 gtttaactcggagcgcttaacaagaaggtagaaagggaccttttagagtggaagggagga 670
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 844 gtttaactcggagtgcttaacaagaaggtagaaaggggccttttagagtggaagggagga 785
Query: 671 aagaagccctcggg 684
||||||||||||||
Sbjct: 784 aagaagccctcggg 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_d09.g1 MSMg01no547_d09.g1 CHROMAT_FILE:
MSMg01no547_d09.g1 PHD_FILE: MSMg01no547_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:47 2005
(692 letters)
>mm_chr18_67985764_67986855
Length = 1092
Score = 1236 bits (639), Expect = 0.0
Identities = 675/693 (97%), Gaps = 12/693 (1%)
Strand = Plus / Plus
Query: 1 attcactaagagcatgtgttagcttcctagtaagatggtattacaatggctaagattcat 60
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 201 attcactaagagcatgtgttagcttcctagtaagacggtagtacaatggctaagattcat 260
Query: 61 ttaaagaaagtagggcttattttgagttatggtttcactccatggtggtttggctttgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaagaaagtagggcttattttgagttatggtttcactccatggtggtttggctttgtt 320
Query: 121 gttttgagcctgagtcagcactttacatcatagctggagtgtggctgaggaaactgtacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttttgagcctgagtcagcactttacatcatagctggagtgtggctgaggaaactgtacc 380
Query: 181 tcatggcagctaggagggagctagggatgcgggaggggagaaaaaagaaggaaaagagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatggcagctaggagggagctagggatgcgggaggggagaaaaaagaaggaaaagagac 440
Query: 241 agcagagcaaagagggcagagcagggagagagagacaaggaaggaagtggctggcatcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 agcagagcaaagagggcagagcagggagagagagacaaggaaggaagtggctggcgtcct 500
Query: 301 catgtccccttcaagggcatgcactcagtgatagaatgtccttctatcctcctaaagttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgtccccttcaagggcatgcactcagtgatagaatgtccttctatcctcctaaagttc 560
Query: 361 caccaccttccaggagtgccacactgctctctaggtcctcagtgcataggccctggccaa 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 caccaccttccaggagtgccacactgctctctaggtccttagtgcataggccctggccaa 620
Query: 421 ctatggcacaatgtaatgacatcagttttttcaacttaagtagaacataaaacattttaa 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 ctatggcacaatgtaatgacatcagtttcttcaacttaagtagaacataaaacattttaa 680
Query: 481 ggaagatttatttattttatgtttatgagaattttgctttatatgtgtatgtgcacagtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaagatttatttattttatgtttatgagaattttgctttatatgtgtatgtgcacagtg 740
Query: 541 cacttgcatggtgctcatggaagtcagaggaagttagatcccttagagttaaagttacat 600
|||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 741 cacttgcatggtgctcatggaagt----------tagatcccttagagttaaagttacgt 790
Query: 601 gaacttgtgaacagagccatcatgtagggtgctggaaatttga-cctgggtcctctggaa 659
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 791 gaacttgtgaacagagccatcatgtagggtgctggaaatt-gaacctgggtcctctggaa 849
Query: 660 gagcagtcagtcagttcttttaactgttgagcc 692
|||||||||||||||||||||||||||||||||
Sbjct: 850 gagcagtcagtcagttcttttaactgttgagcc 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
