BAC Information

Click to search

BAC

Clone NameMSMg01-547L13
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547L13.T7 (MSMg01no547_l13.b1)MSMg01-547L13.TJ (MSMg01no547_l13.g1)
ACCAG612240AG612241
length728722
length of high quality
(start - end)		578 (41 - 618)569 (69 - 637)
definitionCHROMAT_FILE: MSMg01no547_l13.b1 PHD_FILE: MSMg01no547_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:26 2005CHROMAT_FILE: MSMg01no547_l13.g1 PHD_FILE: MSMg01no547_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGGAAATCATCACTCAGGGACTTCAGGCAGAAAACTAGCCAGTCAGCC
TCTGGATAGACAAGGCTCAACAGTTCAGAGAACCAGGCCATCGCAAATAG
TTCACAGACCTGCAAGGAAGACATGCAGATCCCTGCCCCCCACCCTACCC
CTCCCCCAGCCCCACCCAAACATAGGGAGAAAAGGCAGTGTGGGGGAGGG
GGAGGTGCTGTGAGAGAATTTAGATAGCTCGAAGAAATAAATAGCTGGAG
ACTTCATTCATTTACTTATTTTATTGAGTATATGGTGAAAGAGGGAAAAT
GGCTCGAAAAGGAGGGAGGGCAGACTGTCTTCCCATGCTGGGATCATTCA
TGCCTTAAGAAGGAATGCAGGAGGGTGGAGAGATGGCTCAGCGGTTTAGA
GCCCTGACTGCTCTTCTGAAGATCCTGAGTTCAAATCCCAGCAACCAAAT
GGGTGGGTGGTTCACAACCACCCACAATGAGATCTGGTGCCCTCGTCTAG
TGTGTCCTACACTGCTACAGTGTACTTACATATAATAAATAAATCTGAAG
CAAAAGGGGGAGGAGGGGGNAGGAGGAGGAAGGNAGNCAGTCAGTCCAAA
GCGGCTCCCGTTTGAATCCCAAAGGGCAGTCTTGTAACCCTGCAGAGATA
GATAGAAGTGAAAACCACAGTAAGCAAG

ATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTCCACATTT
GCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGA
ACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAA
TGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGT
TTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTT
CTACTTCATGTTTTTTTTTTTTTTTTTTAGAGACAGGGTTTCTCTGTATA
GCCCTGGCTGTCCTGGCACATTGGATTTTATAACAGACTTTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTAATACTTCTCCTGTGATTGCCGTAACTTG
CAATCTAGTGGGCTTATGTTTGATTCCTGTAATCTTTTTTTCTAATTCTT
TTTCCTTTTTATATTTTATTTTATTTTATTTTATTTTATTTTATTTTATT
TTATTTTATTTTATTTTATTTTATTTTGGTTTTTGAGACAGGGTTTCTCT
GTATAGCCCTGGCTGTCCTGGAACTCAGTTTGCAGACCAGGCTGGCCTAG
AACTCAGAAATCCTCCCATCTCTGCCTCCCGAGTGCTGAGATTAAAGGCG
TGCACCACCACACCCGGCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_l13.g1 MSMg01no547_l13.g1 CHROMAT_FILE:
MSMg01no547_l13.g1 PHD_FILE: MSMg01no547_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:26 2005
         (569 letters)



>mm_chr18_40467476_40468443
          Length = 968

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 968
Length adjustment: 10
Effective length of query: 559
Effective length of database: 958
Effective search space:   535522
Effective search space used:   535522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |