Query= MSMg01no548_h13.b1 MSMg01no548_h13.b1 CHROMAT_FILE:
MSMg01no548_h13.b1 PHD_FILE: MSMg01no548_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:24 2005
(231 letters)
>mm_chr18_72296838_72297469
Length = 632
Score = 426 bits (220), Expect = e-124
Identities = 229/232 (98%), Gaps = 1/232 (0%)
Strand = Plus / Minus
Query: 1 ttcaacctatgtatgaagataaacatctgaatatttggaaacatatggaaggaaaagcat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttcaacctatgtatgaagataaacatctgaatatttggaaacatatggaaggaaaagcaa 306
Query: 61 ttccctttatatccagatgtttaatgttattcaaattcatgacataaagaaaaagaatat 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 305 ttccctttatatccagatgtttaatgttattcaaattcgtgacataaagaaaaagaatat 246
Query: 121 gctgaggcagctgtgttta-ggtttactaatttttttgatagttcataaaataaaaaact 179
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gctgaggcagctgtgtttaaggtttactaatttttttgatagttcataaaataaaaaact 186
Query: 180 taaaaattaacaaaaattatccagtcatttaaattcaagggtatgctatagt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 taaaaattaacaaaaattatccagtcatttaaattcaagggtatgctatagt 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 632
Length adjustment: 9
Effective length of query: 222
Effective length of database: 623
Effective search space: 138306
Effective search space used: 138306
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no548_h13.g1 MSMg01no548_h13.g1 CHROMAT_FILE:
MSMg01no548_h13.g1 PHD_FILE: MSMg01no548_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:24 2005
(515 letters)
>mm_chr18_72122587_72123501
Length = 915
Score = 845 bits (437), Expect = 0.0
Identities = 495/519 (95%), Gaps = 12/519 (2%)
Strand = Plus / Plus
Query: 1 caggtctaggaatgagagtgggaggg-gaggggggctagggagcaggaggggggattttc 59
|||||||||||||||||||||| ||| |||||||| |||||| |||||||||||| ||||
Sbjct: 198 caggtctaggaatgagagtgggggggagagggggggtagggaacaggaggggggagtttc 257
Query: 60 cgaggggaatggaggaaaggggataacatgaaatgtaaataaagaaaatatcttaaaaaa 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cgagaggaatggaggaaaggggataacatgaaatgtaaataaagaaaatatcttaaaaaa 317
Query: 120 aaaa--gactgaagaaagataaggaaggagccaagacattgaccaatgtttacaggatca 177
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 318 aaaaaagactgaagaaagataaggaaggagccaagacatagaccaatgtttacaggatca 377
Query: 178 gaggtcccttttgtataaccagaaccctgctgagggtccccctcctcactccccaccccc 237
|| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 378 gacatcccttttgtataaccagaaccctgctgaggatccccctcttcactccccaccccc 437
Query: 238 aacaaaaaccttgattaagtagacaaagaaagtcctgctttgagcaaaacttaaacaaac 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aacaaaaaccttgattaagtagacaaagaaagtcctgctttgagcaaaacttaaacaaat 497
Query: 298 agctattaactatgtcttttgaagagttgtagcagtgacaattccctcccaaaaggggct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agctattaactatgtcttttgaagagttgtagcagtgacaattccctcccaaaaggggct 557
Query: 358 ttgggtaaggagatattttgtatatccttcactcctctcccctctttttaattgattcta 417
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 558 ttgggtaaggagatattttgtatatccttcactcctct-------ttttaattgagtcta 610
Query: 418 actcagcag-tacacttgtggttttctagaacattggagtgtcagacatgtcactgcatg 476
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 611 actcagcaggtacacttgtggttttctagaacattg-agtgtcagacatgtcactgcatg 669
Query: 477 atgtgtctcttagtccaatctagtgtcaagatggccgaa 515
|||||||||||||||||||||||||||||||||||||||
Sbjct: 670 atgtgtctcttagtccaatctagtgtcaagatggccgaa 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
