BAC Information

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BAC

Clone NameMSMg01-548P24
Chromosome18 (Build37)
Map Location 87,524,254 - 87,721,819
singlet/doubletdoublet
Overlap genePpia-ps18_1039.1
Upstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
Downstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548P24.T7 (MSMg01no548_p24.b1)MSMg01-548P24.TJ (MSMg01no548_p24.g1)
ACCAG613212AG613213
length706720
length of high quality
(start - end)		454 (52 - 505)336 (82 - 417)
definitionCHROMAT_FILE: MSMg01no548_p24.b1 PHD_FILE: MSMg01no548_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:31:04 2005CHROMAT_FILE: MSMg01no548_p24.g1 PHD_FILE: MSMg01no548_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:31:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,721,373 - 87,721,819)(87,524,254 - 87,524,589)
sequence
TTTTAGCGTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTCAACCTGATAAACAACTTCACCAAAGTAGCTGGATAT
AAAATTAACTCGAACAAATCAGTGGTCTTCCTCTTCTCAAAGGATACCCA
GGCTAAGAAAGAAATTAGGGAAACAACATCCTCACAATAGTGACAAATAA
GATAAAACACTTTGGTATGACTCTAAACAAGTAGAAGATCTGTATGACTG
GGACTTCAAGTCTTTTAAGAAAGAATCCTTCGAAGCCAGAAGCCTGTCGT
GGTGAAGAGGAAATGGATCTACTGCACCAAGAGCTCCTGAACCCTACACC
CCAGAAACAATAAGTCCACTGAATTGTTGAATACCCCCCAGAAAAAAGAA
AGAACGAAAGAACTAAAGAACAAAAGAAAGAACATAAGAATGCAAGAATG
GAAGATAGAAATAGAGAAAGAAAGAGTATGAAAGAAAGAGAGAGAGAGAG
AGAGCAAGGGAGGGAGGAAGGAAAGGGGGGGAGGAAGGAAAGGAAGGGAA
GTTNTTTTTTTTTTTTCCTTCTTCCTCTTTGAGCGCTTCATTTTTACTGC
TATTTTATTTTGATTTTGATGCGGTTTACACTTCATCCGTCTCATTTTTT
TTCCCTTGTTCAGTTTTTTCGTGTCGCTTGATTTATATTGTCGATATTCG
TGTGAG

AAAAACGCTATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGCATGAACAGCCACC
CCTAACTTGCACATTCGTGTTTGGAGCTGCTCTCTGGCCATGCTTCTTTG
TGTGAAGTATTGATCAGCTATAGCAGGAAGGCACGTAGATCCTGACTGAG
GGGGTCTGAGCACAGGCGGCAGGTGTATCTCAGCTCCATCTCTTTCTCTC
TTTTATACAGTCATTAGTATTTCAGAGACTCCATTCCGTAACTACACTCA
AACAGCTTATTAACGTTAAAGTCATTTGTTGTGCCTTAGGTAATGTTGCT
ACTAGTCATAGCAGTTGACAATTAATGAAAAAAAGTCCAGAGATTTGAAA
AAGAGCAAGTAGCAGTATATACTAGCGTTTGGAAAGAGGTTTGGAGGAAA
TGATGAAAAATTTTGTAATCTAAAAGAAAATACCATTAAAACATTTTTCT
TTCAAAAACTGGGTTTAATTTTTACCATCAAATTAAACCTAACCTGGGAA
ATAACGTCCAAAAAACAAGGTTAAAATTTTCCTTTTAAACCCCCCGAAGG
CCCAAAAAAAAAATTTTTTCAACCCCCCCCCTTCCCCGGGTTTAAAAAGG
TTTGGGGGGAACCGGGAGGAACTCTCTAATAAATAAAAAAAAATTTTGGG
GGGAGAAAAAAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_p24.b1 MSMg01no548_p24.b1 CHROMAT_FILE:
MSMg01no548_p24.b1 PHD_FILE: MSMg01no548_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:04 2005
         (454 letters)



>mm_chr18_87721060_87721913
          Length = 854

 Score =  764 bits (395), Expect = 0.0
 Identities = 434/447 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcaacctgataaacaacttcaccaaagtagctggatataaaattaactcgaac 64
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 760 gaattactcaacctgataaacaacttcaccaaactagctggatataaaattaactcgaac 701

                                                                       
Query: 65  aaatcagtggtcttcctcttctcaaaggatacccaggctaagaaagaaattagggaaaca 124
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 700 aaatcagttgtcttcctcttctcaaaggatacacaggctaagaaagaaattagggaaaca 641

                                                                       
Query: 125 acatcctcacaatagtgacaaataagataaaacactttggtatgactctaaacaagtaga 184
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 640 acatcctcacaatagtgacaaataatataaaacaccttggtatgactctaaacaagtaga 581

                                                                       
Query: 185 agatctgtatgactgggacttcaagtcttttaagaaagaatccttcgaagccagaagcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agatctgtatgactgggacttcaagtcttttaagaaagaatccttcgaagccagaagcct 521

                                                                       
Query: 245 gtcgtggtgaagaggaaatggatctactgcaccaagagctcctgaaccctacaccccaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gtcgtggtgaagaggaaatggatctactgcaccaagagctcctgaaccctacaccccaga 461

                                                                       
Query: 305 aacaataagtccactgaattgttgaataccccccagaaaaaagaaagaacgaaagaacta 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 460 aacaataagtccactgaattgttgaataccccccagaaagaagaaagaacgaaagaacta 401

                                                                       
Query: 365 aagaacaaaagaaagaacataagaatgcaagaatggaagatagaaatagagaaagaaaga 424
           ||||| ||||||||||||||||||||| ||||| | |||| |||||||||||||||||||
Sbjct: 400 aagaataaaagaaagaacataagaatgaaagaacgaaagaaagaaatagagaaagaaaga 341

                                      
Query: 425 gtatgaaagaaagagagagagagagag 451
           ||| |||||||||||||||||||||||
Sbjct: 340 gtaagaaagaaagagagagagagagag 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no548_p24.g1 MSMg01no548_p24.g1 CHROMAT_FILE:
MSMg01no548_p24.g1 PHD_FILE: MSMg01no548_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:05 2005
         (336 letters)



>mm_chr18_87524054_87524789
          Length = 736

 Score =  588 bits (304), Expect = e-172
 Identities = 328/336 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagcatgaacagccacccctaacttgcacattcgtgtttggagctgctctctggccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 agcagcatgaacagccacccctaacttgcacattcgtgtttggagctgctctctgaccat 260

                                                                       
Query: 61  gcttctttgtgtgaagtattgatcagctatagcaggaaggcacgtagatcctgactgagg 120
           |||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gcttctttctctgaagtattgatcagctatggcaggaaggcacgtagatcctgactgagg 320

                                                                       
Query: 121 gggtctgagcacaggcggcaggtgtatctcagctccatctctttctctcttttatacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtctgagcacaggcggcaggtgtatctcagctccatctctttctctcttttatacagt 380

                                                                       
Query: 181 cattagtatttcagagactccattccgtaactacactcaaacagcttattaacgttaaag 240
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| 
Sbjct: 381 cattagtatttcagagactccattccgtttctacactcaaacagcttattaacgttaaac 440

                                                                       
Query: 241 tcatttgttgtgccttaggtaatgttgctactagtcatagcagttgacaattaatgaaaa 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tcatttgttgtgccttaggtaatgttgctactagtcatagcagtcgacaattaatgaaaa 500

                                               
Query: 301 aaagtccagagatttgaaaaagagcaagtagcagta 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagtccagagatttgaaaaagagcaagtagcagta 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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