BAC Information

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BAC

Clone NameB6Ng01-002D16
Chromosome19 (Build37)19 (Build37)
Map Location 53,029,445 - 53,030,12252,984,826 - 52,985,332
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042936, Ins1, LOC100043450
Downstream geneXpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002D16.bB6Ng01-002D16.g
ACCDH840313DH840314
length6791,182
definitionDH840313|Mus musculus domesticus DNA, BAC clone: B6Ng01-002D16, 5' end.DH840314|Mus musculus domesticus DNA, BAC clone: B6Ng01-002D16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,029,445 - 53,030,122)(52,984,826 - 52,985,332)
sequence
gaattctttagtaataaagtgtctctttatacacatagtccttggtcacc
ctgctttgcaacataaaatgtatgaaatgttcaggaaaaattcctttcca
gcaccatataatcttttagtagacggtggctaagctatttacctcttgat
aagaagttagtggaaaaaaaaaactgcagggaaaatattctgtatttcct
ttttgatcttagtaattggttttataattggtagacctatgttggcaccc
atgagcaactacctgccatttagaagcaagcccgtgttctagcagtttaa
tgaatgctggccagtgctaggcccccgtggcaacaactctacataacacc
tctggtgaggcagtgtgcaatttcctagttttcccatgtacctctaacaa
aatcagtgaaagttgccccctcaaaaagacgccaagaagcaggcctcact
ggttgtagccattgggaaaagaaaccagttatgttggcaaagaaaggact
taggcctttaaattggaatacggtcttgctcccatggggcaggaggggag
gacttcctgtcctcccaacctccacaaccacaggaccccaggttcctttt
gaaggtaaggacttctctcaggtactgttgtgttggttgcaagttctcaa
ctgcaaattgcagcttataaccctggtta
tccatctttgcatgcttgttcggattattggtcgtcaacatttaagtgaa
catatactaggaaattcggaatatctcttttggatattataatatgattt
cgtgggtttcctctttgatttctgccctccttatgttgccctgaaatttt
tcttgctatttttcaaattcgtgacgtctttttggtcaacacattgaaga
aaatgctccgaactttttacctactgacgaggttgtgtttgggaatgctt
acacgcccccacacccacacacacacacacacacacacacccacacacac
acaaccccttgcaggcactctcagggagaaggaaagccacaattgattta
ctctcccctccctgatagattccatttatacaactactctaggggtgggg
accgccctggtgcggaaacagccccccctgaatcctcacatcattaaaga
aaaggcttctccctttctttggccaactcaactgctgcctaccccccccc
cccaggcggcggtatcctcccacccccctcatttctggtgggattgtgac
cggctggggcttgcacaagtcttgtgcacactgtcacaatgtttgggagt
tcagaactacaggtgcactgacggcgaccacctcttctggctcttaaaat
tcaccacccccctcttccgctactaaccctgaggcttttgggaaggggtg
tgatatgaatacctggtttagggatgaacactcccggtttaggagtcttt
gttccctgcccctttggccagccttggggggtggggctgggcttgcttgt
caccctaatgagatcaaaagtttctgaggcctctgtcccggttaaatttt
tgcttcccacaacgattgtctacgattttaatcacttgtctctgacaaat
ctgtctcggggtataaaaatacgcgacataatatttttccgaagaaagga
aaaatccaacctcacacgagagatacccaagattgaaatctcgagattaa
cacaacactggggggccacgatgaaagatcttctcgaatgaaactattgc
tagtagatccgcatactatagacacatcacgggtctttcgtgctacaaga
tggagtgaatagcagcgagaaagattccctgtaaaacaaaacaccagaga
tgcttctgtcttattgaaactaaatggtcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_53029445_53030122
seq2: B6Ng01-002D16.b_43_721 (reverse)

seq1  TAACCAGTGTTCTGAGCTGCAATTTGCAGTTGGGAACTTGCAACCACCAC  50
      ||||||| ||| | |||||||||||||||||| ||||||||||||| |||
seq2  TAACCAGGGTTATAAGCTGCAATTTGCAGTTGAGAACTTGCAACCAACAC  50

seq1  AGCAGTACCTGAGAGAAGTCCTTGCCTTCAAAA-GAACCTGGGGTCCTGT  99
      | ||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  AACAGTACCTGAGAGAAGTCCTTACCTTCAAAAGGAACCTGGGGTCCTGT  100

seq1  GGTTGTGGAGGTTGGGAGGACAGGAGGTCCTCCCCTCCTGCCCCATGGGA  149
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTTGTGGAGGTTGGGAGGACAGGAAGTCCTCCCCTCCTGCCCCATGGGA  150

seq1  GCAAGACCGTATTCCAATTTAAAGGCCTAAGTCCTTTCTTTGCCAACATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACCGTATTCCAATTTAAAGGCCTAAGTCCTTTCTTTGCCAACATA  200

seq1  ACTGGTTTCTTTTCCCAATGGCTACAACCAGTGAGGCCTGCTTCTTGGCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTCTTTTCCCAATGGCTACAACCAGTGAGGCCTGCTTCTTGGCG  250

seq1  TCTTTTTGAGGGGGCAACTTTCACTGATTTTGTTAGAGGTACATGGGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGAGGGGGCAACTTTCACTGATTTTGTTAGAGGTACATGGGAAA  300

seq1  ACTAGGAAATTGCACACTGCCTCACCAGAGGTGTTATGTAGAGTTGTTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAAATTGCACACTGCCTCACCAGAGGTGTTATGTAGAGTTGTTGC  350

seq1  CACGGGGGCCTAGCACTGGCCAGCATTCATTAAACTGCTAGAACACGGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGGGCCTAGCACTGGCCAGCATTCATTAAACTGCTAGAACACGGGC  400

seq1  TTGCTTCTAAATGGCAGGTAGTTGCTCATGGGTGCCAACATAGGTCTACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTAAATGGCAGGTAGTTGCTCATGGGTGCCAACATAGGTCTACC  450

seq1  AATTATAAAACCAATTACTAAGATCAAAAAGGAAATACAGAATATTTTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAAACCAATTACTAAGATCAAAAAGGAAATACAGAATATTTTCC  500

seq1  CTGCAGTTTTTTTTTTCCACTAACTTCTTATCAAGAGGTAAATAGCTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTTTTTTTTTCCACTAACTTCTTATCAAGAGGTAAATAGCTTAG  550

seq1  CCACCGTCTACTAAAAGATTATATGGTGCTGGAAAGGAATTTTTCCTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGTCTACTAAAAGATTATATGGTGCTGGAAAGGAATTTTTCCTGAA  600

seq1  CATTTCATACATTTTATGTTGCAAAGCAGGGTGACCAAGGACTATGTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATACATTTTATGTTGCAAAGCAGGGTGACCAAGGACTATGTGTA  650

seq1  TAAAGAGACACTTTATTACTAAAGAATTC  678
      |||||||||||||||||||||||||||||
seq2  TAAAGAGACACTTTATTACTAAAGAATTC  679

seq1: chr19_52984826_52985332
seq2: B6Ng01-002D16.g_675_1182 (reverse)

seq1  TTTGACCATTTAGTTTCCAATAAGGTACAGAGGCATC-CTGGTGTGTGTC  49
      |||||||||||||||| |||||||  ||||| ||||| ||||||| | | 
seq2  TTTGACCATTTAGTTT-CAATAAG--ACAGAAGCATCTCTGGTGT-TTTG  46

seq1  TTTCACAGGTACACATGCATGGTGCTATCAAGTGTATTTTGCAGCAACGG  99
      ||| ||||| |  | | |  | ||||||  | |  || ||| ||| ||| 
seq2  TTTTACAGGGAATCTTTCTCGCTGCTATTCACTCCATCTTGTAGC-ACGA  95

seq1  TAGACTGGTGA-GTGTCAAATGGAATGCCAATCATAAAGCCCTAGCTAAA  148
       ||||  |||| |||||  || | ||||  ||| ||     ||||| || 
seq2  AAGACCCGTGATGTGTC-TATAGTATGCGGATC-TA-----CTAGC-AAT  137

seq1  AGAAT------AGAGGA-CTTACA-AGTGACCACCCAGTGTTGTGGAAAT  190
      ||  |      ||| || ||| ||  ||| || ||||||||||||  |||
seq2  AGTTTCATTCGAGAAGATCTTTCATCGTGGCCCCCCAGTGTTGTGTTAAT  187

seq1  CCTGGGATGTC-ATCATGGGTCTAATATGTCTAAGGTTGGGTTTTTCC-T  238
      |  | ||| || ||| ||||| |     || | ||||||| ||||||| |
seq2  CTCGAGATTTCAATCTTGGGTATCTCTCGTGTGAGGTTGGATTTTTCCTT  237

seq1  CCAAAGGAAATAGATTCTGAGGTGAATATTGGTATTCAGGGAATGAGTTG  288
       |   ||||| | ||| ||  | | || ||  ||  | | ||  || |||
seq2  TCTTCGGAAAAATATTATGTCGCGTATTTTTATACCCCGAGACAGATTTG  287

seq1  CAAATGACAACATCTATAAAGGGGAAACAAGAGTTGTGGAAAGGAAGAGC  338
        |  |||||    |  |||  | | ||||  ||||||| ||| || |  
seq2  TCAGAGACAAGTGATTAAAATCGTAGACAATCGTTGTGGGAAGCAAAAAT  337

seq1  TGAACCGAAACA-TGGCCACAAAAAAAGTTAGATCTCAATCACTATAAAA  387
      | |||||  |||  |||| | | |||  || ||||||| |      | ||
seq2  TTAACCGGGACAGAGGCCTC-AGAAACTTTTGATCTCATTAGGGTGACAA  386

seq1  TCAAGCCCCGCCCCACCCCCCAA-GCTGGCC-CATGTGCAGGGAACAAAG  435
       ||||||| |||||||||||||| |||||||  | | |||||||||||||
seq2  GCAAGCCCAGCCCCACCCCCCAAGGCTGGCCAAAGGGGCAGGGAACAAAG  436

seq1  ACTCCTAAACCGGGAGTCTTCATCCCTAAACCAGGTATTCATATCACACC  485
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTCCTAAACCGGGAGTGTTCATCCCTAAACCAGGTATTCATATCACACC  486

seq1  CCTTCCCAAAAGCCTCAGGGTT  507
      ||||||||||||||||||||||
seq2  CCTTCCCAAAAGCCTCAGGGTT  508