BAC Information

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BAC

Clone NameB6Ng01-003E07
ChromosomeY (Build37)19 (Build37)
Map Location 248,325 - 248,45649,086,342 - 49,087,432
singlet/doubletsingletsinglet
Overlap geneJarid1d
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3
Downstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003E07.bB6Ng01-003E07.g
ACCDH841036DH841037
length6931,077
definitionDH841036|Mus musculus domesticus DNA, BAC clone: B6Ng01-003E07, 5' end.DH841037|Mus musculus domesticus DNA, BAC clone: B6Ng01-003E07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(248,325 - 248,456)(49,086,342 - 49,087,432)
sequence
taacagaggaatcttgaatggctgagaaacacgtaaagacatgttcaaag
tccttagtgatcaggaaaatgcaaatcaaaaagaccctgagattccacct
tacaccaatcagaatggctaagatcaaaaactcaggtaaaagcacacatt
ggtgagaacgtggaaaaggaagaactgctggtgggattgcaaactggtac
aactattctggaagttcctcagaaaactggaaatagattttttgtttgtt
tgtttttgttttttgttttggttttggtttttggagacagggtctctctg
tgtagccttggccgtcctggaactctctctgtagaccaggctggcctcaa
actcagaaattcacctgcctctgcctcccaagtgctgggattaaaagtgt
gtgccaccactgcccggctctctagaaagagatttaactgaagacccaga
aatagcacttttggataaatacccaaaagatgttctactacaccacaggg
gtatgtgctcaactatgttcatatcgtgcttattggtgatagacagaagc
tggatacaacccagatgtctcacaatggaagaatgcatacagaaaatgtg
gttcatttacacagtggaatactattcctctattaagaatgaggacatca
tgagttttacaggtaaatggatggaactagaaaatatcatcct
gaattcaactatggtcattttattaagcattttttttttttagttacttg
ggacaccataattttgtatatttttgaggcacagagtgatattctgagac
acgtaggcattgtgtaacattccactgaagataagcaatgtatctaagtg
cagtgcatttattgcttctttgaattggcagcattcatttagagcaacgc
aggtcgaagcacatgacatagaagcacatgacatagaagcacatgacata
gaagcacatgacatagaagcacatgacatagaagcacgtgacatagaagc
acgtgacatagaagcacgtgacatagaagcacatgacatagaagcacgtg
acatagaagcacatgacatagaagcacgtgacatagaagcacgtgacata
gaagcacgtgacatagaagcacatgacatagaagcacatgacatagaagc
acatgacatagaagaaacttggattcagagtgtgatgatcctggctgact
ccgggaatcggttctaaagccaacgctcaagtgcttttctaggcaaattt
cctctccatcatccaaaacaggagagccacttttgtcattttacccatcc
ctccccacggcagccctactaataggactcagacctctcctattgtcagc
accaataaattaaacggtttgtagacacacatctagtgcctcttttacac
aaggcacacttttaggagttgacttttctaccacagagggacaaaagttg
atcaatttattccaactaaacgtacagactcctaagaatgtttgcaggtt
actctctacaggcaaacaattagaaccacagatgaccctcctggccatct
gaactctgctctctctatgattaacagtctaattaacaaggctggtttag
cacttatacgagaatcacttacaggtgcaatattcctgaagataatatag
gctggctcagtttttgccttgtcagtaacaatcataaaaatgtattttta
gtcacttatgggaccctgtggggcaaatcttgtactcagttcccatgaat
attcagactaaacaaagatttaaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_248325_248456
seq2: B6Ng01-003E07.b_338_469

seq1  GAGATAGGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTTTGTA  50
      |||| ||||| |||||||||| || |||| |||||||||||| || ||||
seq2  GAGACAGGGTCTCTCTGTGTAGCCTTGGCCGTCCTGGAACTCTCTCTGTA  50

seq1  GACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCTTCCCAAGT  100
      ||||||||||||||| ||||||||||| ||||||||||||| ||||||||
seq2  GACCAGGCTGGCCTCAAACTCAGAAATTCACCTGCCTCTGCCTCCCAAGT  100

seq1  GCTGGGATTAAAGGAGTGCGCCACCACTGCCC  132
      |||||||||||| | ||| |||||||||||||
seq2  GCTGGGATTAAAAGTGTGTGCCACCACTGCCC  132

seq1: chr19_49086342_49087432
seq2: B6Ng01-003E07.g_68_1144 (reverse)

seq1  ATGTTTTTAAAATCTTTTGTTTTTAGTTCTGAATA-TCATGGGAACTGAG  49
      ||||||   |||||||   | ||||| |||||||| ||||||||||||||
seq2  ATGTTT---AAATCTT---TGTTTAG-TCTGAATATTCATGGGAACTGAG  43

seq1  GTAACAAGATTTTGCCCCACAGGGTCCCATAAGTGGAACTTAAAAATACA  99
         |||||| |||||||||||||||||||||||||  || ||||||||||
seq2  --TACAAGA-TTTGCCCCACAGGGTCCCATAAGTG--AC-TAAAAATACA  87

seq1  TTTTTATGATTGTTACTGACAAGGCAAAAACTGAGCCAGCTTATAATTAT  149
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  TTTTTATGATTGTTACTGACAAGGCAAAAACTGAGCCAGCCTAT-ATTAT  136

seq1  CTTCAGGAATATTTGCACCTGTAAGTGATTCTCGTATAAGTGCTAAACCA  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGAATA-TTGCACCTGTAAGTGATTCTCGTATAAGTGCTAAACCA  185

seq1  GCCTTGTTAATTAGACTGTTAATCATAGAGAGAGCAGAGTTCAGATGGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTAATTAGACTGTTAATCATAGAGAGAGCAGAGTTCAGATGGCC  235

seq1  AGGAGGGTCATCTGTGGTTCTAATTGTTTGCCTGTAGAGAGTAACCTGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGTCATCTGTGGTTCTAATTGTTTGCCTGTAGAGAGTAACCTGCA  285

seq1  AACATTCTTAGGAGTCTGTACGTTTAGTTGGAATAAATTGATCAACTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTTAGGAGTCTGTACGTTTAGTTGGAATAAATTGATCAACTTTT  335

seq1  GTCCCTCTGTGGTAGAAAAGTCAACTCCTAAAAGTGTGCCTTGTGTAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTGTGGTAGAAAAGTCAACTCCTAAAAGTGTGCCTTGTGTAAAA  385

seq1  GAGGCACTAGATGTGTGTCTACAAACCGTTTAATTTATTGGTGCTGACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACTAGATGTGTGTCTACAAACCGTTTAATTTATTGGTGCTGACAA  435

seq1  TAGGAGAGGTCTGAGTCCTATTAGTAGGGCTGCCGTGGGGAGGGATGGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGGTCTGAGTCCTATTAGTAGGGCTGCCGTGGGGAGGGATGGGT  485

seq1  AAAATGACAAAAGTGGCTCTCCTGTTTTGGATGATGGAGAGGAAATTTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACAAAAGTGGCTCTCCTGTTTTGGATGATGGAGAGGAAATTTGC  535

seq1  CTAGAAAAGCACTTGAGCGTTGGCTTTAGAACCGATTCCCGGAGTCAGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAGCACTTGAGCGTTGGCTTTAGAACCGATTCCCGGAGTCAGCC  585

seq1  AGGATCATCACACTCTGAATCCAAGTTTCTTCTATGTCATGTGCTTCTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCATCACACTCTGAATCCAAGTTTCTTCTATGTCATGTGCTTCTAT  635

seq1  GTCATGTGCTTCTATGTCATGTGCTTCTATGTCACGTGCTTCTATGTCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGCTTCTATGTCATGTGCTTCTATGTCACGTGCTTCTATGTCAC  685

seq1  GTGCTTCTATGTCACGTGCTTCTATGTCATGTGCTTCTATGTCACGTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTATGTCACGTGCTTCTATGTCATGTGCTTCTATGTCACGTGCT  735

seq1  TCTATGTCATGTGCTTCTATGTCACGTGCTTCTATGTCACGTGCTTCTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTCATGTGCTTCTATGTCACGTGCTTCTATGTCACGTGCTTCTAT  785

seq1  GTCACGTGCTTCTATGTCATGTGCTTCTATGTCATGTGCTTCTATGTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGTGCTTCTATGTCATGTGCTTCTATGTCATGTGCTTCTATGTCAT  835

seq1  GTGCTTCTATGTCATGTGCTTCTATGTCATGTGCTTCGACCTGCGTTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTATGTCATGTGCTTCTATGTCATGTGCTTCGACCTGCGTTGCT  885

seq1  CTAAATGAATGCTGCCAATTCAAAGAAGCAATAAATGCACTGCACTTAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGAATGCTGCCAATTCAAAGAAGCAATAAATGCACTGCACTTAGA  935

seq1  TACATTGCTTATCTTCAGTGGAATGTTACACAATGCCTACGTGTCTCAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGCTTATCTTCAGTGGAATGTTACACAATGCCTACGTGTCTCAGA  985

seq1  ATATCACTCTGTGCCTCAAAAATATACAAAATTATGGTGTCCCAAGTAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTCTGTGCCTCAAAAATATACAAAATTATGGTGTCCCAAGTAAC  1035

seq1  TAAAAAAAAAAAATGCTTAATAAAATGACCATAGTTGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAATGCTTAATAAAATGACCATAGTTGAATTC  1077