BAC Information

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BAC

Clone NameB6Ng01-003G12
Chromosome19 (Build37)
Map Location 6,000,892 - 6,140,364
singlet/doubletdoublet
Overlap geneCapn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2
Upstream geneSlc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20
Downstream geneEG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003G12.bB6Ng01-003G12.g
ACCDH841129DH841130
length9411,094
definitionDH841129|Mus musculus domesticus DNA, BAC clone: B6Ng01-003G12, 5' end.DH841130|Mus musculus domesticus DNA, BAC clone: B6Ng01-003G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,000,892 - 6,001,838)(6,139,253 - 6,140,364)
sequence
gaattccagaccatagaaacttttttttttttttgaaaaaacaaaaacca
agggaagggatgatggacaggtagggatgtggctctgtggcagatcgctt
gcttagtccctggatttgatctctgtcaccacagaacagaaccacacacg
cttttcactgcccaactccccccaaagtttgcaacaatgaaacctacaac
aaacacttattactgggcgtgggaaggtgagccacaggtgcatgaggtca
agcgtgatgatctgagttcgatccccaagtcccgggaaagaagagaacct
actcttttgttttgttttgttttgtttttccagacagggtttctctgtgt
agccctggctgtcctggaactcactctatagaccaggttggcctcaaact
cagaaatccacctgcctctgcctcccgagtgctgggattaaaggcgtgtg
ccaccacgcccagctgagaacctactcttacaagttatactttgacattg
tgggtgagccccttggcccaaaagtaaataaacattagaaacttaagcaa
caaaaagacaaggagagccaggactccgttagtggtggctcctaattgct
cttctagccagtgtcctaggcaggaaaaagtaacaaaagttggaagaaga
atgggacaggaagaaacaagtgaattatcatctgattgcctacaaagaag
ttcaatcttggttacaaaatacatttaaagaggcaactgtgccttattgt
acccataaatattaattattaattcaagaggtaagaaagtatttgtttgt
ttttgtctgtttttttttcccctgacaggtttctctgtgtatccctgtct
gtctgaatttactctgtatacaggctggcttcatactagaggcacttgtc
tctgcttgctagggctgtgatcaaggcatgcgccactacat
gtaaaacagggaagcgaaaaaggcttcatttcagatattctgtgatgaaa
ggggagaaaaaattgataaagcaagtaagatatgtagtgtaggatgagaa
gaatagagtccacaaggaggtagagagagctgggaaaacgtaagcagagg
acctgcaagtgcgaaggccctggaggaggataagacaggcatgttcaaga
aaggttgagaaggaaagagctggagagagggagagcccatgggctggggc
catttaggcagctggactatgaagggagcacaggatggtggcttagacca
tggtggtagtaggagagtattatgacttgctgctgaatgggagaagacaa
tgagggagatgtagccaagcatgaactggtctctggccagagtgttcaga
aggacaaggagccacttgctgagatgagagacgcatgtccctgggaagac
accaaccctgactgttgggcaggtaggtagcagccatcagcctagaaacg
atcatgggatggcccagctggggagtgctgagacccaggtgtagacgctt
gtgtgaagtcagatgagggtaacaggatggggtctgggagagggccaagg
aaagagcagcagcgcccggagcagagcagaagctgggccacccggccagt
ggagagcagtaagggggtcttcggagacctacctggcaaagtgaggcttc
aggaagcatcaggagccagtctgctaacagtagacctgtagaaagcaaga
ggctaagtaaaactggtgcagtggtgaagaaccagggaacagggggttca
gtgcccagtacccacttggtgcttcacagccttgtgtaacttcagtcctg
aggtcctcgtgtaggcaaaactcaaatattctaagcaaacaaaaaatgag
catggtatcgaacacctcgaatgccagcgttcagaaggtaaggaaggtga
atctacgggcttgagttcacccggtctacagagcaagtcaggccggcagg
ctacatagacttgtcttaaaaaaaaaaacaaatgcaggaaagtccacatg
gtgtactgctgtagttctggccttccagaggcagaggctggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_6000892_6001838
seq2: B6Ng01-003G12.b_47_987

seq1  GAATTCCAGACCATAGAAACTTTTTTTTTTTTTTGAAAAAACAAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCATAGAAACTTTTTTTTTTTTTTGAAAAAACAAAAACCA  50

seq1  AGGGAAGGGATGATGGACAGGTAGGGATGTGGCTCTGTGGCAGATCGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGGATGATGGACAGGTAGGGATGTGGCTCTGTGGCAGATCGCTT  100

seq1  GCTTAGTCCCTGGATTTGATCTCTGTCACCACAGAACAGAACCACACACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTCCCTGGATTTGATCTCTGTCACCACAGAACAGAACCACACACG  150

seq1  CTTTTCACTGCCCAACTCCCCCCAAAGTTTGCAACAATGAAACCTACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACTGCCCAACTCCCCCCAAAGTTTGCAACAATGAAACCTACAAC  200

seq1  AAACACTTATTACTGGGCGTGGGAAGGTGAGCCACAGGTGCATGAGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTATTACTGGGCGTGGGAAGGTGAGCCACAGGTGCATGAGGTCA  250

seq1  AGCGTGATGATCTGAGTTCGATCCCCAAGTCCCGGGAAAGAAGAGAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGATGATCTGAGTTCGATCCCCAAGTCCCGGGAAAGAAGAGAACCT  300

seq1  ACTCTTTTGTTTTGTTTTGTTTTGTTTTTCCAGACAGGGTTTCTCTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTGTTTTGTTTTGTTTTGTTTTTCCAGACAGGGTTTCTCTGTGT  350

seq1  AGCCCTGGCTGTCCTGGAACTCACTCTATAGACCAGGTTGGCCTCAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACTCTATAGACCAGGTTGGCCTCAAACT  400

seq1  CAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTG  450

seq1  CCACCACGCCCAGCTGAGAACCTACTCTTACAAGTTATACTTTGACATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACGCCCAGCTGAGAACCTACTCTTACAAGTTATACTTTGACATTG  500

seq1  TGGGTGAGCCCCTTGGCCCAAAAGTAAATAAACATTAGAAACTTAAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAGCCCCTTGGCCCAAAAGTAAATAAACATTAGAAACTTAAGCAA  550

seq1  CAAAAAGACAAGGAGAGCCAGGACTCCGTTAGTGGTGGCTCCTAATTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGACAAGGAGAGCCAGGACTCCGTTAGTGGTGGCTCCTAATTGCT  600

seq1  CTTCTAGCCAGTGTCCTAGGCAGGAAAAAGTAACAAAAGTTGGAAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGCCAGTGTCCTAGGCAGGAAAAAGTAACAAAAGTTGGAAGAAGA  650

seq1  ATGGGACAGGAAGAAACAAGTGAATTATCATCTGATTGCCTACAAAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACAGGAAGAAACAAGTGAATTATCATCTGATTGCCTACAAAGAAG  700

seq1  -TCAATC-TGGTTACAAAATACATTTAAAGAGGCAACTGTGCCTTATTGT  748
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCTTGGTTACAAAATACATTTAAAGAGGCAACTGTGCCTTATTGT  750

seq1  ACCCATAAATATTAATTATTAATTCAAGAGGTAAGAAAGTATTTGTTTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAAATATTAATTATTAATTCAAGAGGTAAGAAAGTATTTGTTTGT  800

seq1  TTTTGTCTGTTTTTTTTTTCCCCTGACAGGGTTTCTCTGTGTATCCCTGT  848
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  TTTTGTCTG-TTTTTTTTTCCCCTGACA-GGTTTCTCTGTGTATCCCTGT  848

seq1  CTGTCCTGAATTTACTCTGTAGCACAGGCTGGCTTCTAACTCAGAGGCCA  898
      |||| ||||||||||||||||  |||||||||||||  ||| ||||| ||
seq2  CTGT-CTGAATTTACTCTGTA-TACAGGCTGGCTTCATACT-AGAGG-CA  894

seq1  CTTGTCTCTGCCTGCCAAGGGCTGGGATCAAAGGCATGCGCCACCACAT  947
      ||||||||||| || | ||||||| |||| |||||||||||||| ||||
seq2  CTTGTCTCTGCTTG-CTAGGGCTGTGATC-AAGGCATGCGCCACTACAT  941

seq1: chr19_6139253_6140364
seq2: B6Ng01-003G12.g_75_1168 (reverse)

seq1  TCTCCAGCCTCTGCCTCTTGAGTGCCAGAACTACAGGCATGTAACACCAT  50
      |||||||||||||||||| ||  |||||||||||| ||| || |||||||
seq2  TCTCCAGCCTCTGCCTCTGGAAGGCCAGAACTACA-GCA-GT-ACACCAT  47

seq1  GTTGGACTTTTCCTGCATTTTGGTTTTTTTTTTTTTTGAGACAAGGTCTA  100
      | ||||| ||||||||||     || ||||||||||| |||||| |||||
seq2  G-TGGAC-TTTCCTGCAT-----TTGTTTTTTTTTTTAAGACAA-GTCTA  89

seq1  TGTAGCCTTGGCCGGCCTGGAACTTGCTCTGTAGACCGGGTTGGACTCAA  150
      ||||||||  |||||||||  ||||||||||||||||||| || ||||||
seq2  TGTAGCCT--GCCGGCCTG--ACTTGCTCTGTAGACCGGG-TGAACTCAA  134

seq1  GCCCGTAGATTCACCTGCCTTTACCTTCTGAACGCTGGCATTCGAGGTGT  200
      |||||||||||||||| || ||||||||||||||||||||||||||||||
seq2  GCCCGTAGATTCACCTTCC-TTACCTTCTGAACGCTGGCATTCGAGGTGT  183

seq1  TCGATACCATGCTCATTTTTTGTTTGCTTAGAATATTTTGAGTTTTTGCC  250
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  TCGATACCATGCTCATTTTTTGTTTGCTTAGAATA-TTTGAG-TTTTGCC  231

seq1  TACACGAGGACCTCAGGACTGAAGTTACACAAGGCTGTGAAGCACCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGAGGACCTCAGGACTGAAGTTACACAAGGCTGTGAAGCACCAAGT  281

seq1  GGGTACTGGGCACTGAA-CCCCTGTTCCCTGGTTCTTCACCACTGCACCA  349
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGGTACTGGGCACTGAACCCCCTGTTCCCTGGTTCTTCACCACTGCACCA  331

seq1  GTTTTACTTAGCCTCTTGCTTTCTACAGGTCTACTGTTAGCAGACTGGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTTAGCCTCTTGCTTTCTACAGGTCTACTGTTAGCAGACTGGCT  381

seq1  CCTGATGCTTCCTGAAGCCTCACTTTGCCAGGTAGGTCTCCGAAGACCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCTTCCTGAAGCCTCACTTTGCCAGGTAGGTCTCCGAAGACCCC  431

seq1  CTTACTGCTCTCCACTGGCCGGGTGGCCCAGCTTCTGCTCTGCTCCGGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCTCTCCACTGGCCGGGTGGCCCAGCTTCTGCTCTGCTCCGGGC  481

seq1  GCTGCTGCTCTTTCCTTGGCCCTCTCCCAGACCCCATCCTGTTACCCTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTCTTTCCTTGGCCCTCTCCCAGACCCCATCCTGTTACCCTCA  531

seq1  TCTGACTTCACACAAGCGTCTACACCTGGGTCTCAGCACTCCCCAGCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTCACACAAGCGTCTACACCTGGGTCTCAGCACTCCCCAGCTGG  581

seq1  GCCATCCCATGATCGTTTCTAGGCTGATGGCTGCTACCTACCTGCCCAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCCATGATCGTTTCTAGGCTGATGGCTGCTACCTACCTGCCCAAC  631

seq1  AGTCAGGGTTGGTGTCTTCCCAGGGACATGCGTCTCTCATCTCAGCAAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGGTTGGTGTCTTCCCAGGGACATGCGTCTCTCATCTCAGCAAGT  681

seq1  GGCTCCTTGTCCTTCTGAACACTCTGGCCAGAGACCAGTTCATGCTTGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTGTCCTTCTGAACACTCTGGCCAGAGACCAGTTCATGCTTGGC  731

seq1  TACATCTCCCTCATTGTCTTCTCCCATTCAGCAGCAAGTCATAATACTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTCCCTCATTGTCTTCTCCCATTCAGCAGCAAGTCATAATACTCT  781

seq1  CCTACTACCACCATGGTCTAAGCCACCATCCTGTGCTCCCTTCATAGTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTACCACCATGGTCTAAGCCACCATCCTGTGCTCCCTTCATAGTCC  831

seq1  AGCTGCCTAAATGGCCCCAGCCCATGGGCTCTCCCTCTCTCCAGCTCTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCTAAATGGCCCCAGCCCATGGGCTCTCCCTCTCTCCAGCTCTTT  881

seq1  CCTTCTCAACCTTTCTTGAACATGCCTGTCTTATCCTCCTCCAGGGCCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAACCTTTCTTGAACATGCCTGTCTTATCCTCCTCCAGGGCCTT  931

seq1  CGCACTTGCAGGTCCTCTGCTTACGTTTTCCCAGCTCTCTCTACCTCCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTTGCAGGTCCTCTGCTTACGTTTTCCCAGCTCTCTCTACCTCCTT  981

seq1  GTGGACTCTATTCTTCTCATCCTACACTACATATCTTACTTGCTTTATCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTCTATTCTTCTCATCCTACACTACATATCTTACTTGCTTTATCA  1031

seq1  ATTTTTTCTCCCCTTTCATCACAGAATATCTGAAATGAAGCCTTTTTCGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTCCCCTTTCATCACAGAATATCTGAAATGAAGCCTTTTTCGC  1081

seq1  TTCCCTGTTTTAC  1112
      |||||||||||||
seq2  TTCCCTGTTTTAC  1094