BAC Information

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BAC

Clone NameB6Ng01-005N16
Chromosome19 (Build37)
Map Location 60,220,508 - 60,352,664
singlet/doubletdoublet
Overlap geneD19Ertd737e, 4933412A08Rik
Upstream geneVax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093
Downstream genePrlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, Gprk5, LOC671322, BC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005N16.bB6Ng01-005N16.g
ACCDH842876DH842877
length1,0361,113
definitionDH842876|Mus musculus domesticus DNA, BAC clone: B6Ng01-005N16, 5' end.DH842877|Mus musculus domesticus DNA, BAC clone: B6Ng01-005N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,351,619 - 60,352,664)(60,220,508 - 60,221,647)
sequence
gaattccagtctagtaaagatcataaatgttcttcactgtggtaactaca
gtacaaatttcaacttagtctatggctgggggatgcactttgcccaaact
acaattctatgtctttccaagactgaaaagattacaggtctgacttgtat
agtaaaaaccacaagactttaataaattgaacccaaagaaaactgaatat
ataagaaatttaggagcttgcattatattagaattaacagatttcttacg
gtttgacattcctaaacaggcactaactagtacagttactttctaaattg
gccatatagcatatactatatttttgtagacccttgatagattgctgaag
atatgaaaatagaatgggccgggcggtggtggcgcacgcctttaatccta
gcacttgggaggcagaggcagtgggatttctgagtttgaggccagcctgg
tctacaaagtgagttccaggacagccagagctatacagagaaaccctgtc
tcgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaatagaatgggaatttt
atagtcaggattgtttgtcatgtacaaacaatctttgttatctgttttga
aagcctaagacttccaaggttctacaatgaccctgtgtcatataatgatt
tgtgattttttttaaaaaacatgtgtgtgtgtgcatatgtgcttacatgg
gtacgagtcatgtgtgtatgtggaggccagagacaaatctgactgttgtt
ctgcaggctccaccactatgtgtttagtttagttttgtttgtttttgtct
tgagacaaggtctctcactggcttggaaccggcctagtagatctcaatgg
ctggataatgctcgagtttctctgcttcctcagtgctaagactacaaagc
cttgtgactacagtaccctttaacatctcattgttattttttatctatat
taaaaaatatctgtctctgtctctctcactctctcactttcctttctggt
ctcctcggttatgtgcaagtccacggagttagaaaa
gaattcctgtcccggtcgtcgggcagccactggacacttgcccatctttc
agcctttaaattgagaggaaccaccgaagaacgcatgcacagtgtttccc
aaaagccctgtatccttgggagcaaccaagatgtaatcggtcagagaaat
ggtttcttcctggatccatgtgagttaaactgttgtgggactggagacac
tcgcgcctgcagagttgtggtgacaagcaaggtaagccgggtgacttttg
taaccctttttcccagcagagactactcctgtgtgtagaaaccacggcct
ggcagcgacttctctaactcataaaacttgctctaacacacgggggaaaa
aagcttcacttaatccagtatcctgtgttgattcctgcctgcgacatctt
aattcttacccacgggcaggaggactgctctcggctgtggacagtgatgt
ggatttcacaatattcaataatcagacttttcatgggggctattccagtc
aaatattgatttagtcagaaaggagtgatagaaatacagctctgtaggtt
tattcttgttaaaagtccaaagtagagtgcagactttgagagttcttctt
gcagaaagtattagcaaaaagtaatgtccaggcagccccaagtgatacaa
gacagttagctatgaatttcacaaacatcattaaatgtgtgtggatgtag
tgcagtactggaatgagagaagataactaaaattaagataaatagcttag
gaactcacagccagggaagccgtaattcacaagttttctaagctagtgtt
cttattgcctttaggaataggaagcattgcttccaaagctgggttaacca
ctcttgaaaagcataaggtacaaagtaatttactctcttatttccagatt
aaaaccctacgatagtattgtctcgcccttatgctttcgagaaacactca
tctacagaaatacacatttgtcttcgactctgatctctctctgtgctggg
actggggtcacagcatctcaaaccctgtttctcaagctatctaggttatc
tattcatggaacctgatcgactgagaatctcagtgcctattagcaagtct
tgtaaagtgtcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_60351619_60352664
seq2: B6Ng01-005N16.b_49_1084 (reverse)

seq1  TTTTCTAGACTCCGTGGGACTTGCACATACACGGAGAGAGA-CAGAAAGA  49
      ||||||| ||||||| ||||||||||||| || ||| |||| ||||||| 
seq2  TTTTCTA-ACTCCGT-GGACTTGCACATA-ACCGAG-GAGACCAGAAAG-  45

seq1  GAAAGAGAGAGGAAGAGAGAGAGACAGAGACAGAATATTTTTTAATATAG  99
      ||||| |||||  || ||||||||||||||||| ||||||||||||||||
seq2  GAAAGTGAGAG--AGTGAGAGAGACAGAGACAG-ATATTTTTTAATATAG  92

seq1  ATAAAAAATAAACAATGAAGATGTTAAAGGGTACTGTAGTCACAAGGCTT  149
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  ATAAAAAAT-AACAATG-AGATGTTAAAGGGTACTGTAGTCACAAGGCTT  140

seq1  TGTAGTCTTAGCACTGAGGAAGCAGAGAAACTCGAAGCATTATCCAGCCA  199
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTAGTCTTAGCACTGAGGAAGCAGAGAAACTCG-AGCATTATCCAGCCA  189

seq1  TTGAGATCTACTAGGCCGGTTCCAAGCCAGTGAGAGACCTTGTCTCAAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATCTACTAGGCCGGTTCCAAGCCAGTGAGAGACCTTGTCTCAAGA  239

seq1  CAAAAACAAACAAAACTAAACTAAACACATAGTGGTGGAGCCTGCAGAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAACAAAACTAAACTAAACACATAGTGGTGGAGCCTGCAGAAC  289

seq1  AACAGTCAGATTTGTCTCTGGCCTCCACATACACACATGACTCGTACCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCAGATTTGTCTCTGGCCTCCACATACACACATGACTCGTACCCA  339

seq1  TGTAAGCACATATGCACACACACACATGTTTTTTAAAAAAAATCACAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCACATATGCACACACACACATGTTTTTTAAAAAAAATCACAAAT  389

seq1  CATTATATGACACAGGGTCATTGTAGAACCTTGGAAGTCTTAGGCTTTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATGACACAGGGTCATTGTAGAACCTTGGAAGTCTTAGGCTTTCA  439

seq1  AAACAGATAACAAAGATTGTTTGTACATGACAAACAATCCTGACTATAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATAACAAAGATTGTTTGTACATGACAAACAATCCTGACTATAAA  489

seq1  ATTCCCATTCTATTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCGAGAC  549
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTCCCATTCTATTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGAC  539

seq1  AGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCA  589

seq1  GGCTGGCCTCAAACTCAGAAATCCCACTGCCTCTGCCTCCCAAGTGCTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTCAAACTCAGAAATCCCACTGCCTCTGCCTCCCAAGTGCTAG  639

seq1  GATTAAAGGCGTGCGCCACCACCGCCCGGCCCATTCTATTTTCATATCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCGTGCGCCACCACCGCCCGGCCCATTCTATTTTCATATCTT  689

seq1  CAGCAATCTATCAAGGGTCTACAAAAATATAGTATATGCTATATGGCCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATCTATCAAGGGTCTACAAAAATATAGTATATGCTATATGGCCAA  739

seq1  TTTAGAAAGTAACTGTACTAGTTAGTGCCTGTTTAGGAATGTCAAACCGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGTAACTGTACTAGTTAGTGCCTGTTTAGGAATGTCAAACCGT  789

seq1  AAGAAATCTGTTAATTCTAATATAATGCAAGCTCCTAAATTTCTTATATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCTGTTAATTCTAATATAATGCAAGCTCCTAAATTTCTTATATA  839

seq1  TTCAGTTTTCTTTGGGTTCAATTTATTAAAGTCTTGTGGTTTTTACTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTTCTTTGGGTTCAATTTATTAAAGTCTTGTGGTTTTTACTATA  889

seq1  CAAGTCAGACCTGTAATCTTTTCAGTCTTGGAAAGACATAGAATTGTAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGACCTGTAATCTTTTCAGTCTTGGAAAGACATAGAATTGTAGT  939

seq1  TTGGGCAAAGTGCATCCCCCAGCCATAGACTAAGTTGAAATTTGTACTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAAAGTGCATCCCCCAGCCATAGACTAAGTTGAAATTTGTACTGT  989

seq1  AGTTACCACAGTGAAGAACATTTATGATCTTTACTAGACTGGAATTC  1046
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCACAGTGAAGAACATTTATGATCTTTACTAGACTGGAATTC  1036

seq1: chr19_60220508_60221647
seq2: B6Ng01-005N16.g_68_1180

seq1  GAATTCCTGTCCCGGTCGTCGGGCAGCCACTGGACACTTGCCCATCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCCGGTCGTCGGGCAGCCACTGGACACTTGCCCATCTTTC  50

seq1  AGCCTTTAAATTGAGAGGAACCACCGAAGAACGCATGCACAGTGTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTAAATTGAGAGGAACCACCGAAGAACGCATGCACAGTGTTTCCC  100

seq1  AAAAGCCCTGTATCCTTGGGAGCAACCAAGATGTAATCGGTCAGAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCCTGTATCCTTGGGAGCAACCAAGATGTAATCGGTCAGAGAAAT  150

seq1  GGTTTCTTCCTGGATCCATGTGAGTTAAACTGTTGTGGGACTGGAGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTCCTGGATCCATGTGAGTTAAACTGTTGTGGGACTGGAGACAC  200

seq1  TCGCGCCTGCAGAGTTGTGGTGACAAGCAAGGTAAGCCGGGTGACTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCGCCTGCAGAGTTGTGGTGACAAGCAAGGTAAGCCGGGTGACTTTTG  250

seq1  TAACCCTTTTTCCCAGCAGAGACTACTCCTGTGTGTAGAAACCACGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTTTTTCCCAGCAGAGACTACTCCTGTGTGTAGAAACCACGGCCT  300

seq1  GGCAGCGACTTCTCTAACTCATAAAACTTGCTCTAACACACGGGGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCGACTTCTCTAACTCATAAAACTTGCTCTAACACACGGGGGAAAA  350

seq1  AAGCTTCACTTAATCCAGTATCCTGTGTTGATTCCTGCCTGCGACATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCACTTAATCCAGTATCCTGTGTTGATTCCTGCCTGCGACATCTT  400

seq1  AATTCTTACCCACGGGCAGGAGGACTGCTCTCGGCTGTGGACAGTGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTACCCACGGGCAGGAGGACTGCTCTCGGCTGTGGACAGTGATGT  450

seq1  GGATTTCACAATATTCAATAATCAGACTTTTCATGGGGGCTATTCCAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCACAATATTCAATAATCAGACTTTTCATGGGGGCTATTCCAGTC  500

seq1  AAATATTGATTTAGTCAGAAAGGAGTGATAGAAATACAGCTCTGTAGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGATTTAGTCAGAAAGGAGTGATAGAAATACAGCTCTGTAGGTT  550

seq1  TATTCTTGTTAAAAGTCCAAAGTAGAGTGCAGACTTTGAGAGTTCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTGTTAAAAGTCCAAAGTAGAGTGCAGACTTTGAGAGTTCTTCTT  600

seq1  GCAGAAAGTATTAGCAAAAAGTAATGTCCAGGCAGCCCCAAGTGATACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGTATTAGCAAAAAGTAATGTCCAGGCAGCCCCAAGTGATACAA  650

seq1  GACAGTTAGCTATGAATTTCACAAACATCATTAAATGTGTGTGGATGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTAGCTATGAATTTCACAAACATCATTAAATGTGTGTGGATGTAG  700

seq1  TGCAGTACTGGAATGAGAGAAGATAACTAAAATTAAGATAAATAGCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTACTGGAATGAGAGAAGATAACTAAAATTAAGATAAATAGCTTAG  750

seq1  GAACTCACAGCCAGGGAAGCCGTAATTCACAAGTTTTCTAAGCTAGTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACAGCCAGGGAAGCCGTAATTCACAAGTTTTCTAAGCTAGTGTT  800

seq1  CTTATTGCCTTTAGGAATAGGAAGCATTGCTTCCAAAGCTGGGTTAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGCCTTTAGGAATAGGAAGCATTGCTTCCAAAGCTGGGTTAACCA  850

seq1  CTCTTGAAAAGCATAAGGTACAAAGTAATTTACTCTCTTATTTCCAAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCTTGAAAAGCATAAGGTACAAAGTAATTTACTCTCTTATTTCC-AGAT  899

seq1  TAAAAACCCTACGATAGTATTGTCCTCGCCCTTAATGCTTTCGGAGAAAA  950
      | ||||||||||||||||||||| ||||||||| |||||||| ||| |||
seq2  T-AAAACCCTACGATAGTATTGT-CTCGCCCTT-ATGCTTTC-GAG-AAA  944

seq1  CACTCATCCTACAGAAATACACATTTGTCTTCGGAACTCTGATCTCTCTC  1000
      ||||||| |||||||||||||||||||||||||  |||||||||||||| 
seq2  CACTCAT-CTACAGAAATACACATTTGTCTTCG--ACTCTGATCTCTCT-  990

seq1  CTGTGCTGGGACTGGGGTTCACAGCATCTCAAACCCTGTTTCTCAGGCCT  1050
      ||||||||||||||||| ||||||||||||||||||||||||||| ||  
seq2  CTGTGCTGGGACTGGGG-TCACAGCATCTCAAACCCTGTTTCTCAAGC--  1037

seq1  TATCTAAGGGTTATCTATTTCCATGGAAACACTGATCGACTTGAGACATC  1100
      ||||||  |||||||||||  |||||||   ||||||||| ||||| |||
seq2  TATCTA--GGTTATCTATT--CATGGAA--CCTGATCGAC-TGAGA-ATC  1079

seq1  TCCAGTGCTCATATTTAGCAAAGTCTGTGAAGAGTGTCGA  1140
      | ||||||  |   ||||| |||||| || | ||||||||
seq2  T-CAGTGCCTA---TTAGC-AAGTCT-TGTAAAGTGTCGA  1113