BAC Information

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BAC

Clone NameB6Ng01-006K18
Chromosome19 (Build37)
Map Location 45,296,118 - 45,466,315
singlet/doubletdoublet
Overlap geneLbx1, Btrc
Upstream geneScd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1
Downstream geneEG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006K18.bB6Ng01-006K18.g
ACCDH843466DH843467
length1,0451,051
definitionDH843466|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K18, 5' end.DH843467|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,465,276 - 45,466,315)(45,296,118 - 45,297,166)
sequence
gaattctaaccaggtcttctgcgcagggtgtgctgctgacctaaaaatca
tcacaaactgcctttgctgaacgagctaagtgggtggacagcattcccag
tgctgatacctaagaggatgcagaaaaggagaggaagataaatgtttccc
agtctcccagactgcagagtataaataacagaacatgctgacagtgttta
aggctgaccttgatggaatagtttatttcaatcgctcctagatgtaaagt
gcactcactggggtaaactgaccttgctgggcatctgcttggtcatgcca
tttctctaataaaactgagaaaagcagacataccctggaaatacagtagg
acaggaatcaaaggatttaagtgtgtctatccacatgttcttgacaagaa
aaattccatcattgtagacagggataaattgtggctgcttgcctgagcag
ctaggggaatgagaatattaagaacgggatgttctaggaagacatttttt
ataagcaccagccaagtcatctctccaccattttctgtgacactaccaaa
caacacacattagcttcattagcttctcaaaatgacattttatgatgaag
ctcagaccttatagtcaaacccttgttaaaatagtcataactagttgtac
tgaaatgataattatcaacaacaaatgatgaaaaacacaccacacacttg
ggtgataatggtgcaaccctttaacttaatatcagcactcgggagacaga
ggcaggtggatctctgcagccattcttagctagttctcaggttctttttc
ccatcctcgcccccacctgtctcaccccctatcactagataaaacagaaa
gaaaggagagaggagagagagagatttctgaatttaatttctttcttctt
gtttcttctttgcttgtaactaatggattcttctttttcccctctttatc
cccaccctatcccacccacccctttcactagaataggagagaaagaagaa
tagaggggagaagagaatctagaagcaagaagagcagagaagggg
gaattcttcggaatctagactttggaaagggaggaaatgctcacaccacc
tgctttctgcagactctgggtctgtggcagcagcttttctgagctcgcct
gccccttgctactagaggtagggaggtgagaacccgggactctcccaatc
cctgggtttccttctttgcacttcctttgcatatcctcagcctttcccac
cccaagctagaatctgttccaaacttagaaaaaaaaaaatgacaatatcc
ctcatgcccttcaggatgagaaaacagactctaaatgtctagtccctccc
agagcatctgagggagccggccattctcttcctttccagagtcaatctct
catcccctcccacccccaccccatcccaggcagcctgtaattggaaaaac
tttgtcttgtaacttgtgtgacccctctccagtcttttccatcttctgag
gtttgacccaaagcgtcccccatcccttcccattccttattttgtgattt
cagtcggacttggggaaggaagaccatcaaaggtcccaaagtagcctcgt
ggctagttgggcaagcattaatcacattcatccatctaggaaattcaagt
ctaaaagctgctggcgcacaggtttaatacagggactccttagggagact
gggattcaccggcttctcctcaactaacagagtgaacatgaaaagagaaa
caagattaaagcaaagatgcccaggatcccggcaaggggcttccctggtg
gtccaagccctgctctagggaccttagcagaaaccccagatccccagatc
tgagttgttgggcttaggggaataatatatcgagcctggaaagtctgttg
tctcttgggactgaaggtcctttcagtctcgaacctgcttctcgtagatg
ccagctgcagcgcgcagggtcttagctctctgcccagcagtggctccaga
aagcaagtgagcggttgggtatctgtctcctccaagacgtccgttcccac
cgcccttgcagctgccctactgcctcccgggcctggggggggcggggtgg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45465276_45466315
seq2: B6Ng01-006K18.b_47_1091 (reverse)

seq1  CCCCCTCTCTTGCTC-TCTTGC-TCT-GGTTCTC-TCTCCCCTCTATTCT  46
      |||| |||| ||||| |||||| ||| | ||||| |||||||||||||||
seq2  CCCCTTCTC-TGCTCTTCTTGCTTCTAGATTCTCTTCTCCCCTCTATTCT  49

seq1  TCTTTCTCTCCTA-TCTAGTG-AAGGGGTGGGTGGGAATAGGGTGGGGAT  94
      ||||||||||||| ||||||| |||||||||||||| |||||||||||||
seq2  TCTTTCTCTCCTATTCTAGTGAAAGGGGTGGGTGGG-ATAGGGTGGGGAT  98

seq1  AAAGAGGGGAAAAAGAAGAATCCATTAGTTACAAGCAAAGAAGAAACAAG  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGGAAAAAGAAGAATCCATTAGTTACAAGCAAAGAAGAAACAAG  148

seq1  AAGAAAGAAATTAAATTCAGAAATCTCTCTCTCTCCTCTCTCC-TTCTTT  193
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGAAAGAAATTAAATTCAGAAATCTCTCTCTCTCCTCTCTCCTTTCTTT  198

seq1  CTGTTTTATCTAGTGATAGGGGGTGAGACAGGTGGGGGCGAGGATGGGAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTATCTAGTGATAGGGGGTGAGACAGGTGGGGGCGAGGATGGGAA  248

seq1  AAAGAACCTGAGAACTAGCTAAGAATGGCTGCAGAGATCCACCTGCCTCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCTGAGAACTAGCTAAGAATGGCTGCAGAGATCCACCTGCCTCT  298

seq1  GTCTCCCGAGTGCTGATATTAAGTTAAAGGGTTGCACCATTATCACCCAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCGAGTGCTGATATTAAGTTAAAGGGTTGCACCATTATCACCCAA  348

seq1  GTGTGTGGTGTGTTTTTCATCATTTGTTGTTGATAATTATCATTTCAGTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGTGTGTTTTTCATCATTTGTTGTTGATAATTATCATTTCAGTA  398

seq1  CAACTAGTTATGACTATTTTAACAAGGGTTTGACTATAAGGTCTGAGCTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGTTATGACTATTTTAACAAGGGTTTGACTATAAGGTCTGAGCTT  448

seq1  CATCATAAAATGTCATTTTGAGAAGCTAATGAAGCTAATGTGTGTTGTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAAAATGTCATTTTGAGAAGCTAATGAAGCTAATGTGTGTTGTTT  498

seq1  GGTAGTGTCACAGAAAATGGTGGAGAGATGACTTGGCTGGTGCTTATAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGTCACAGAAAATGGTGGAGAGATGACTTGGCTGGTGCTTATAAA  548

seq1  AAATGTCTTCCTAGAACATCCCGTTCTTAATATTCTCATTCCCCTAGCTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTTCCTAGAACATCCCGTTCTTAATATTCTCATTCCCCTAGCTG  598

seq1  CTCAGGCAAGCAGCCACAATTTATCCCTGTCTACAATGATGGAATTTTTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCAAGCAGCCACAATTTATCCCTGTCTACAATGATGGAATTTTTC  648

seq1  TTGTCAAGAACATGTGGATAGACACACTTAAATCCTTTGATTCCTGTCCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGAACATGTGGATAGACACACTTAAATCCTTTGATTCCTGTCCT  698

seq1  ACTGTATTTCCAGGGTATGTCTGCTTTTCTCAGTTTTATTAGAGAAATGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTTCCAGGGTATGTCTGCTTTTCTCAGTTTTATTAGAGAAATGG  748

seq1  CATGACCAAGCAGATGCCCAGCAAGGTCAGTTTACCCCAGTGAGTGCACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCAAGCAGATGCCCAGCAAGGTCAGTTTACCCCAGTGAGTGCACT  798

seq1  TTACATCTAGGAGCGATTGAAATAAACTATTCCATCAAGGTCAGCCTTAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTAGGAGCGATTGAAATAAACTATTCCATCAAGGTCAGCCTTAA  848

seq1  ACACTGTCAGCATGTTCTGTTATTTATACTCTGCAGTCTGGGAGACTGGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCAGCATGTTCTGTTATTTATACTCTGCAGTCTGGGAGACTGGG  898

seq1  AAACATTTATCTTCCTCTCCTTTTCTGCATCCTCTTAGGTATCAGCACTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTATCTTCCTCTCCTTTTCTGCATCCTCTTAGGTATCAGCACTG  948

seq1  GGAATGCTGTCCACCCACTTAGCTCGTTCAGCAAAGGCAGTTTGTGATGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCTGTCCACCCACTTAGCTCGTTCAGCAAAGGCAGTTTGTGATGA  998

seq1  TTTTTAGGTCAGCAGCACACCCTGCGCAGAAGACCTGGTTAGAATTC  1040
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGGTCAGCAGCACACCCTGCGCAGAAGACCTGGTTAGAATTC  1045

seq1: chr19_45296118_45297166
seq2: B6Ng01-006K18.g_68_1118

seq1  GAATTCTTCGGAATCTAGACTTTGGAAAGGGAGGAAATGCTCACACCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGGAATCTAGACTTTGGAAAGGGAGGAAATGCTCACACCACC  50

seq1  TGCTTTCTGCAGACTCTGGGTCTGTGGCAGCAGCTTTTCTGAGCTCGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTGCAGACTCTGGGTCTGTGGCAGCAGCTTTTCTGAGCTCGCCT  100

seq1  GCCCCTTGCTACTAGAGGTAGGGAGGTGAGAACCCGGGACTCTCCCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTGCTACTAGAGGTAGGGAGGTGAGAACCCGGGACTCTCCCAATC  150

seq1  CCTGGGTTTCCTTCTTTGCACTTCCTTTGCATATCCTCAGCCTTTCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTTCCTTCTTTGCACTTCCTTTGCATATCCTCAGCCTTTCCCAC  200

seq1  CCCAAGCTAGAATCTGTTCCAAACTTAGAAAAAAAAAAATGACAATATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTAGAATCTGTTCCAAACTTAGAAAAAAAAAAATGACAATATCC  250

seq1  CTCATGCCCTTCAGGATGAGAAAACAGACTCTAAATGTCTAGTCCCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCCCTTCAGGATGAGAAAACAGACTCTAAATGTCTAGTCCCTCCC  300

seq1  AGAGCATCTGAGGGAGCCGGCCATTCTCTTCCTTTCCAGAGTCAATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCTGAGGGAGCCGGCCATTCTCTTCCTTTCCAGAGTCAATCTCT  350

seq1  CATCCCCTCCCACCCCCACCCCATCCCAGGCAGCCTGTAATTGGAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTCCCACCCCCACCCCATCCCAGGCAGCCTGTAATTGGAAAAAC  400

seq1  TTTGTCTTGTAACTTGTGTGACCCCTCTCCAGTCTTTTCCATCTTCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTGTAACTTGTGTGACCCCTCTCCAGTCTTTTCCATCTTCTGAG  450

seq1  GTTTGACCCAAAGCGTCCCCCATCCCTTCCCATTCCTTATTTTGTGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACCCAAAGCGTCCCCCATCCCTTCCCATTCCTTATTTTGTGATTT  500

seq1  CAGTCGGACTTGGGGAAGGAAGACCATCAAAGGTCCCAAAGTAGCCTCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGGACTTGGGGAAGGAAGACCATCAAAGGTCCCAAAGTAGCCTCGT  550

seq1  GGCTAGTTGGGCAAGCATTAATCACATTCATCCATCTAGGAAATTCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTTGGGCAAGCATTAATCACATTCATCCATCTAGGAAATTCAAGT  600

seq1  CTAAAAGCTGCTGGCGCACAGGTTTAATACAGGGACTCCTTAGGGAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGCTGCTGGCGCACAGGTTTAATACAGGGACTCCTTAGGGAGACT  650

seq1  GGGATTCACCGGCTTCTCCTCAACTAACAGAGTGAACATGAAAAGAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCACCGGCTTCTCCTCAACTAACAGAGTGAACATGAAAAGAGAAA  700

seq1  CAAGATTAAAGCAAAGATGCCCAGGATCCCGGCAAGGGGCTTCCCTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTAAAGCAAAGATGCCCAGGATCCCGGCAAGGGGCTTCCCTGGTG  750

seq1  GTCCAAGCCCTGCTCTAGGGACCTTAGCAGAAACCCCAGATCCCCAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGCCCTGCTCTAGGGACCTTAGCAGAAACCCCAGATCCCCAGATC  800

seq1  TGAGTTGTTGGGCTTAGGGGAATAATATATCGAGCCTGGAAAGTCTGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGTTGGGCTTAGGGGAATAATATATCGAGCCTGGAAAGTCTGTTG  850

seq1  TCTCTTGGGACTGAAGGTCCTTCCAGCCTCGAACCTGCTTCCCGTAGATT  900
      |||||||||||||||||||||| ||| |||||||||||||| |||||| |
seq2  TCTCTTGGGACTGAAGGTCCTTTCAGTCTCGAACCTGCTTCTCGTAGA-T  899

seq1  GCCAGCTGCAGGCGCGCAGGG-CCTAGC-CTCTGCCCAGCAGGTGGC-CC  947
      |||||||||| |||||||||| | |||| |||||||||||| ||||| ||
seq2  GCCAGCTGCA-GCGCGCAGGGTCTTAGCTCTCTGCCCAGCA-GTGGCTCC  947

seq1  AGGAAGCAAGTGAGCGGTTGGGTATCTGTCT-CTCCAAGACGTCCCGTCC  996
      || |||||||||||||||||||||||||||| |||||||||||||  |||
seq2  AGAAAGCAAGTGAGCGGTTGGGTATCTGTCTCCTCCAAGACGTCCGTTCC  997

seq1  CACCGCCC-TGCAGCTTGGCGCTACTGCCTCCCGGGCCT--GGGGGGCGG  1043
      |||||||| |||||||  || ||||||||||||||||||  |||||||||
seq2  CACCGCCCTTGCAGCT--GCCCTACTGCCTCCCGGGCCTGGGGGGGGCGG  1045

seq1  GGGGGG  1049
      || |||
seq2  GGTGGG  1051