BAC Information

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BAC

Clone NameB6Ng01-006M20
Chromosome19 (Build37)
Map Location 59,170,354 - 59,306,811
singlet/doubletdoublet
Overlap geneVax1, LOC668627, Kcnk18
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626
Downstream geneSlc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006M20.bB6Ng01-006M20.g
ACCDH843560DH843561
length1,083980
definitionDH843560|Mus musculus domesticus DNA, BAC clone: B6Ng01-006M20, 5' end.DH843561|Mus musculus domesticus DNA, BAC clone: B6Ng01-006M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,305,727 - 59,306,811)(59,170,354 - 59,171,345)
sequence
gaattctgggatagagccaggctctatgggaggatgggaagagacagcca
catgacagaatgtaggttaaaataaatgggttatctttagttgtgatcta
atcagagtagagcctaggtatatggccaaggtattgtaaatatattttgg
gtctgagtcttatttctgggagcatggggctaggaggaagaaccaggcca
taacttctatacatggtcatgaccctcatgaaaaagggggtgggggggat
accttggagtacatgaaaagtgcgaggaattgaaacccagatctggcaca
tctgaatcctctcagataggctggttgttgagtgagctcccattcagaag
tttggcagagttaacggacacagaggagcaagtggttgagatgagggaac
aggccaccttactctgactcatgagctctgtgacctgagccaagacattt
tctgaattgctgcctcgatttccttgggtgcaaattcaaagggcaggact
tagtccccaaggtactggagcagggcctggaatctccattccttgggagg
ctgaggcaggaggataagaagttcaaagctgactctaaccctatgcccaa
gcgtcacgtgggtccctcagagccttcagcccttaaggatgtcacaggct
atgaacaagttccccacacaagacgcaccgcattttctagatagggtaca
agcgccatgttctcattcacttcaggaagctgaccgaggcccttcagaag
caatatgcctcccctctgcagctcccagggtcagggcatagagttaagct
tatttcaatttaaagaatcaaatctaatattgcttgcacagtctgtaaag
tgccttttaggatcaaaatcccctacacagcagaacttctggcaatctcc
attactgcccacatttaatggacaataacagataagcagatgacctctgg
atggtcacatagctgcatccacagaagcctgaacctttcatcttcagact
ttgtccaggaacatgttcacctcaaggtgggctttcctaagagcctctga
atgagataggtttacggtcagaaaaatctgctg
gaattcatagatgacaagtttgagccttaaaactgcaggcggtggtctta
ctgtagcttatgccatgtttggttgatatctctggaaagcctgctctttt
ctgatagaagaggggaatctggggacgaggagggaactgcagtggggatg
taatagatgaaagaaaagtaaataaaaaacataatcatttttaaacaaca
gaatttcttaggtttggatccagtattttttttttttttttagttcccta
agtgctagcagactaaagaccaaaaactattggtttaattgctcagaatt
taacatttttttaaaatttaactattttttttaaaacaaggtacatgggg
agatgtgtatgctttataatattattttcctagaatctatgttccacaaa
attcagtgggttacattaaagaaaagataattgtccaaaactgaacttca
ggtgggctcagacccgggggatgagacggcagcacacacatcattaactt
ctgcccttgaaagccctgaaaagttctcacagtaagtagtaaaggcccct
cacggttgcatcattggaagcagatggtagccattttgaaatgtccctgg
cacattctcttcaccctacaaggccttccttcaaaggaaagcagttgagc
agagttcaacccactaaggtgtgatcagaacccaaatgaccaggaagtag
acctacccacctctgtccaccaagaagggactcagcagcctcctgtagca
tctgatttgagaaagagaaatatggaatggaacactagtctccttctcat
ctttcttaccagaagaggtaaacgaaagcatacatacatatgaggtcata
gctaggggaacaggggtgctaagagaagatgctaattgtagactatgaca
ttttccctttccccaccatatcagcacttcactcacaactctgttagtaa
ggttacagtgagagtatcatgactctacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_59305727_59306811
seq2: B6Ng01-006M20.b_49_1131 (reverse)

seq1  CAGCAGATCTTCTGGACCGTAAACATATCTCACTCAGAGGGTCTTAGG-A  49
      |||||||| ||   |||||||||| ||||||| ||||||| ||||||| |
seq2  CAGCAGATTTTTCTGACCGTAAACCTATCTCATTCAGAGGCTCTTAGGAA  50

seq1  AGCCCACCTTGGGTTGGACATGTTCCTGGGCAAGGTCTTGAGGTGAAAGG  99
      ||||||||||| | || |||||||||||| ||| ||||  || |||||||
seq2  AGCCCACCTTGAGGTGAACATGTTCCTGGACAAAGTCTGAAGATGAAAGG  100

seq1  TTCAGGCTCTTGTGGGATGCAGCTATGTGACCATCCAGAGGTCATCTGCC  149
      ||||||||  ||| |||||||||||||||||||||||||||||||||| |
seq2  TTCAGGCTTCTGT-GGATGCAGCTATGTGACCATCCAGAGGTCATCTG-C  148

seq1  TTATCTGTTTATTGTCCATTAAATGTGGGCAGTAATGGAGATTGCCAGAA  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTG-TTATTGTCCATTAAATGTGGGCAGTAATGGAGATTGCCAGAA  197

seq1  GTTCTGCTGTGTAGGGGATTTTGATCCTAAAAGGCACTTTACAGACTGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTGTGTAGGGGATTTTGATCCTAAAAGGCACTTTACAGACTGTG  247

seq1  CAAGCAATATTAGATTTGATTCTTTAAATTGAAATAAGCTTAACTCTATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAATATTAGATTTGATTCTTTAAATTGAAATAAGCTTAACTCTATG  297

seq1  CCCTGACCCTGGGAGCTGCAGAGGGGAGGCATATTGCTTCTGAAGGGCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACCCTGGGAGCTGCAGAGGGGAGGCATATTGCTTCTGAAGGGCCT  347

seq1  CGGTCAGCTTCCTGAAGTGAATGAGAACATGGCGCTTGTACCCTATCTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCAGCTTCCTGAAGTGAATGAGAACATGGCGCTTGTACCCTATCTAG  397

seq1  AAAATGCGGTGCGTCTTGTGTGGGGAACTTGTTCATAGCCTGTGACATCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCGGTGCGTCTTGTGTGGGGAACTTGTTCATAGCCTGTGACATCC  447

seq1  TTAAGGGCTGAAGGCTCTGAGGGACCCACGTGACGCTTGGGCATAGGGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGCTGAAGGCTCTGAGGGACCCACGTGACGCTTGGGCATAGGGTT  497

seq1  AGAGTCAGCTTTGAACTTCTTATCCTCCTGCCTCAGCCTCCCAAGGAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGCTTTGAACTTCTTATCCTCCTGCCTCAGCCTCCCAAGGAATG  547

seq1  GAGATTCCAGGCCCTGCTCCAGTACCTTGGGGACTAAGTCCTGCCCTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCCAGGCCCTGCTCCAGTACCTTGGGGACTAAGTCCTGCCCTTTG  597

seq1  AATTTGCACCCAAGGAAATCGAGGCAGCAATTCAGAAAATGTCTTGGCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCACCCAAGGAAATCGAGGCAGCAATTCAGAAAATGTCTTGGCTC  647

seq1  AGGTCACAGAGCTCATGAGTCAGAGTAAGGTGGCCTGTTCCCTCATCTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACAGAGCTCATGAGTCAGAGTAAGGTGGCCTGTTCCCTCATCTCA  697

seq1  ACCACTTGCTCCTCTGTGTCCGTTAACTCTGCCAAACTTCTGAATGGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTGCTCCTCTGTGTCCGTTAACTCTGCCAAACTTCTGAATGGGAG  747

seq1  CTCACTCAACAACCAGCCTATCTGAGAGGATTCAGATGTGCCAGATCTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAACAACCAGCCTATCTGAGAGGATTCAGATGTGCCAGATCTGG  797

seq1  GTTTCAATTCCTCGCACTTTTCATGTACTCCAAGGTATCCCCCCCACCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAATTCCTCGCACTTTTCATGTACTCCAAGGTATCCCCCCCACCCC  847

seq1  CTTTTTCATGAGGGTCATGACCATGTATAGAAGTTATGGCCTGGTTCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCATGAGGGTCATGACCATGTATAGAAGTTATGGCCTGGTTCTTC  897

seq1  CTCCTAGCCCCATGCTCCCAGAAATAAGACTCAGACCCAAAATATATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGCCCCATGCTCCCAGAAATAAGACTCAGACCCAAAATATATTTA  947

seq1  CAATACCTTGGCCATATACCTAGGCTCTACTCTGATTAGATCACAACTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCTTGGCCATATACCTAGGCTCTACTCTGATTAGATCACAACTAA  997

seq1  AGATAACCCATTTATTTTAACCTACATTCTGTCATGTGGCTGTCTCTTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACCCATTTATTTTAACCTACATTCTGTCATGTGGCTGTCTCTTCC  1047

seq1  CATCCTCCCATAGAGCCTGGCTCTATCCCAGAATTC  1085
      ||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCCATAGAGCCTGGCTCTATCCCAGAATTC  1083

seq1: chr19_59170354_59171345
seq2: B6Ng01-006M20.g_68_1042

seq1  GAATTCATAGATGACAAGTTTGAGCCTTAAAACTGCAGGCGGTGGTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGATGACAAGTTTGAGCCTTAAAACTGCAGGCGGTGGTCTTA  50

seq1  CTGTAGCTTATGCCATGTTTGGTTGATATCTCTGGAAAGCCTGCTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTTATGCCATGTTTGGTTGATATCTCTGGAAAGCCTGCTCTTTT  100

seq1  CTGATAGAAGAGGGGAATCTGGGGACGAGGAGGGAACTGCAGTGGGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGAAGAGGGGAATCTGGGGACGAGGAGGGAACTGCAGTGGGGATG  150

seq1  TAATAGATGAAAGAAAAGTAAATAAAAAACATAATCATTTTTAAACAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATGAAAGAAAAGTAAATAAAAAACATAATCATTTTTAAACAACA  200

seq1  GAATTTCTTAGGTTTGGATCCAGTATTTTTTTTTTTTTTTTAGTTCCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTTAGGTTTGGATCCAGTATTTTTTTTTTTTTTTTAGTTCCCTA  250

seq1  AGTGCTAGCAGACTAAAGACCAAAAACTATTGGTTTAATTGCTCAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGCAGACTAAAGACCAAAAACTATTGGTTTAATTGCTCAGAATT  300

seq1  TAACATTTTTTTAAAATTTAACTATTTTTTTTAAAACAAGGTACATGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTTTTAAAATTTAACTATTTTTTTTAAAACAAGGTACATGGGG  350

seq1  AGATGTGTATGCTTTATAATATTATTTTCCTAGAATCTATGTTCCACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTATGCTTTATAATATTATTTTCCTAGAATCTATGTTCCACAAA  400

seq1  ATTCAGTGGGTTACATTAAAGAAAAGATAATTGTCCAAAACTGAACTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGGGTTACATTAAAGAAAAGATAATTGTCCAAAACTGAACTTCA  450

seq1  GGTGGGCTCAGACCCGGGGGATGAGACGGCAGCACACACATCATTAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCTCAGACCCGGGGGATGAGACGGCAGCACACACATCATTAACTT  500

seq1  CTGCCCTTGAAAGCCCTGAAAAGTTCTCACAGTAAGTAGTAAAGGCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTGAAAGCCCTGAAAAGTTCTCACAGTAAGTAGTAAAGGCCCCT  550

seq1  CACGGTTGCATCATTGGAAGCAGATGGTAGCCATTTTGAAATGTCCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTTGCATCATTGGAAGCAGATGGTAGCCATTTTGAAATGTCCCTGG  600

seq1  CACATTCTCTTCACCCTACAAGGCCTTCCTTCAAAGGAAAGCAGTTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTCTTCACCCTACAAGGCCTTCCTTCAAAGGAAAGCAGTTGAGC  650

seq1  AGAGTTCAACCCACTAAGGTGTGATCAGAACCCAAATGACCAGGAAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCAACCCACTAAGGTGTGATCAGAACCCAAATGACCAGGAAGTAG  700

seq1  ACCTACCCACCTCTGTCCACCAAGAAGGGACTCAGCAGCCTCCTGTAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCCACCTCTGTCCACCAAGAAGGGACTCAGCAGCCTCCTGTAGCA  750

seq1  TCTGATTTGAGAAAGAGAAATATGGAATGGAACACTAGTC-CCTTCTCAT  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTGATTTGAGAAAGAGAAATATGGAATGGAACACTAGTCTCCTTCTCAT  800

seq1  CTTTCTTACCAGAAGAGGTAAACGAAGGCATACATACATATGAGGTCATA  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTTCTTACCAGAAGAGGTAAACGAAAGCATACATACATATGAGGTCATA  850

seq1  GGCTAGGGGAACAGGGGTGCTAAGAGAAGGATGGCTAATTGTAAGACTAT  899
       ||||||||||||||||||||||||||| ||| ||||||||| |||||||
seq2  -GCTAGGGGAACAGGGGTGCTAAGAGAA-GAT-GCTAATTGT-AGACTAT  896

seq1  GACAATTTTCCCCTTCCCCCACCCATTATCAGCACTTCCACTCCACAAAA  949
      ||||  ||| ||||| |||||||   ||||||||||| ||||   || ||
seq2  GACA--TTTTCCCTTTCCCCACC--ATATCAGCACTT-CACT---CACAA  938

seq1  CTCCTGTGTAGTAAGGGGTTACAGTGAGAGTATTCCATGACTC  992
      || |||| ||||||  |||||||||||||||||  ||||||||
seq2  CT-CTGT-TAGTAA--GGTTACAGTGAGAGTAT--CATGACTC  975