BAC Information

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BAC

Clone NameB6Ng01-006P23
Chromosome19 (Build37)
Map Location 20,089,073 - 20,090,139
singlet/doubletsinglet
Overlap genenone
Upstream geneRorb, LOC100042218
Downstream geneLOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006P23.bB6Ng01-006P23.g
ACCDH843699DH843700
length1,0611,195
definitionDH843699|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P23, 5' end.DH843700|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaaactaaggacatgagccttagatggacatagtaatgtcaga
gttggcaggatgtctcatgtgtcagaacaatcatcgggttaggtagcaaa
cacgagatgaaagtaacaacacaaatgatacacgcagaagaatcaaaagg
gctgttttgcataaaatcccttttatgatatagaactaaaatggaacata
aagatcatgccacaggatctagaataacaaatggtgtcatggattgttca
ttatatactaggttccatgtgtactttttgctgtattgatttattacttc
ataaatcatagtttaggtaaatatataataagtttgataaagattatcta
ctactagagagtagcatacagggttgatacattaataaacataaattatc
cttaagaattctaagtctagtatccaatggaaaaaataccatatcctaat
aaaatttccatgtttattgacaattatttagtattttgtgatagcttata
ttgacggcctgttatcaaatgtttattgctttgtacccttaagtatcaga
ttttttaaagtattatattcaataaaagctcttcatgcccattgaaattt
atgagtatttttttaaaacctaccatagaacttaatttctataatagact
cacagcatttagaaatttataaatttataagtgaggtgattggagaagca
gtagtcaatataaatcacaaaatattatttggattcaaggtagttcaaaa
tttttgcatgtctttagagcaaagcaaccacaagcgtgtttacacaactt
tacagaatatgtgggcagtaagactcatcaattcaagctgaccagcccag
cttaatccgactgtaatctccatatcataaaaatgtaggatggccaaagc
gatgtagtttccttattcatactcatctaagaatgcttgtgacaatgtct
gtacttttctttaaaataacttagtgttcaggagatggacgaggatgtgc
ttccataagctcttcataggctctatttacttaaaaccttgacagaggca
ctgtgggtaaa
gaattccatgctcaagcgttatgatatttggctatttttcattgggaaat
ttttaacgacttcttctatttctttatgggactgtttagatagtttacct
tcttttaatttaattttggtatgtggtatttggatagaaaaatcatcatt
ttgtctagattttccatttgtattgagtatgggctttggtaggaagttct
gatgatttttttttttaatttcctcagtttctcctgttaagtcccccttt
tcattttttattttattaatttggatgttatctctgggatctttaattgc
tttggctatgggtttatctatcttgttgatttactcaaagaactaggtgt
tggttttgcgattctttgtattgttctctttgtttctaactgtttgattt
tgaccctgagtttgactatttcctaccatctactcctcttggttgtgttt
gctattttttgttctatgacttttaggtgtgctgttaagttgctagtgta
agatccctctactttctttacaaggatacttagtgctatgaattttcctc
ttagcattgcttttaccttgcacaaaactcaactccaagtggatcaagga
cctcatcctaaaatcaggtatactgaatctaatataatagaaatgtgcca
tggaccgggctccgttggcctctctcaatccgtggaaaatcatggttttg
gacagatgggcagggagtcagcaagaattgacaaacagacacagacacaa
gagagtgctgaatctgaatatattttctccaagcaaacaccaggctttga
ataaacaagaaaaataagaaggctaggtaagtacatccctaaggtacact
ggttcttaacacgaaacaagaaatgtatacatgaaaagatagtaggagca
ggccttgtttacaactgagataggacaaccctaattaagatcagctaaca
caggagccaggtgattgctctgatgcaatgctagtctatttttaatccac
cccagaggttcttaaggtaaacctggatatgctatctctgggtctagtga
aagactgccacagagggattcttctctaccttcggtctcaccacaattct
aggcatgggtagaaccctaccagcacccttctgccaggcagcctccactt
agctagttaaaggtgagcacttccatggccgacgatctctcacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20089073_20090139
seq2: B6Ng01-006P23.b_46_1106 (reverse)

seq1  TTTACCCACAGTGCCTCCTTGTCAAAGCTTTTAAGTACATAAGAGCCTAT  50
      |||||||||||||||||  |||| ||| ||||||||| || |||||||||
seq2  TTTACCCACAGTGCCTC--TGTC-AAGGTTTTAAGTAAAT-AGAGCCTAT  46

seq1  GGAGAGCTTTTATTGGAAGCACATCCTCGTCCATCT-CTGGACACTAAGT  99
      | |||||||    ||||||||||||||||||||||| ||| |||||||||
seq2  GAAGAGCTT---ATGGAAGCACATCCTCGTCCATCTCCTGAACACTAAGT  93

seq1  TATTTTAAAG-AAAGTACAGACATTGTCACAAGCATTCCTTAGATGAGTA  148
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  TATTTTAAAGAAAAGTACAGACATTGTCACAAGCATT-CTTAGATGAGTA  142

seq1  TGAATAAGGAAACTACATCGCTTTGGCCATCCTACATTTTTATGATATGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGGAAACTACATCGCTTTGGCCATCCTACATTTTTATGATATGG  192

seq1  AGATTACAGTCGGATTAAGCTGGGCTGGTCAGCTTGAATTGATGAGTCTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACAGTCGGATTAAGCTGGGCTGGTCAGCTTGAATTGATGAGTCTT  242

seq1  ACTGCCCACATATTCTGTAAAGTTGTGTAAACACGCTTGTGGTTGCTTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCACATATTCTGTAAAGTTGTGTAAACACGCTTGTGGTTGCTTTG  292

seq1  CTCTAAAGACATGCAAAAATTTTGAACTACCTTGAATCCAAATAATATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGACATGCAAAAATTTTGAACTACCTTGAATCCAAATAATATTT  342

seq1  TGTGATTTATATTGACTACTGCTTCTCCAATCACCTCACTTATAAATTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTATATTGACTACTGCTTCTCCAATCACCTCACTTATAAATTTA  392

seq1  TAAATTTCTAAATGCTGTGAGTCTATTATAGAAATTAAGTTCTATGGTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTCTAAATGCTGTGAGTCTATTATAGAAATTAAGTTCTATGGTAG  442

seq1  GTTTTAAAAAAATACTCATAAATTTCAATGGGCATGAAGAGCTTTTATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAAAAATACTCATAAATTTCAATGGGCATGAAGAGCTTTTATTG  492

seq1  AATATAATACTTTAAAAAATCTGATACTTAAGGGTACAAAGCAATAAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATACTTTAAAAAATCTGATACTTAAGGGTACAAAGCAATAAACA  542

seq1  TTTGATAACAGGCCGTCAATATAAGCTATCACAAAATACTAAATAATTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAACAGGCCGTCAATATAAGCTATCACAAAATACTAAATAATTGT  592

seq1  CAATAAACATGGAAATTTTATTAGGATATGGTATTTTTTCCATTGGATAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACATGGAAATTTTATTAGGATATGGTATTTTTTCCATTGGATAC  642

seq1  TAGACTTAGAATTCTTAAGGATAATTTATGTTTATTAATGTATCAACCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTAGAATTCTTAAGGATAATTTATGTTTATTAATGTATCAACCCT  692

seq1  GTATGCTACTCTCTAGTAGTAGATAATCTTTATCAAACTTATTATATATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTACTCTCTAGTAGTAGATAATCTTTATCAAACTTATTATATATT  742

seq1  TACCTAAACTATGATTTATGAAGTAATAAATCAATACAGCAAAAAGTACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAACTATGATTTATGAAGTAATAAATCAATACAGCAAAAAGTACA  792

seq1  CATGGAACCTAGTATATAATGAACAATCCATGACACCATTTGTTATTCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACCTAGTATATAATGAACAATCCATGACACCATTTGTTATTCTA  842

seq1  GATCCTGTGGCATGATCTTTATGTTCCATTTTAGTTCTATATCATAAAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGTGGCATGATCTTTATGTTCCATTTTAGTTCTATATCATAAAAG  892

seq1  GGATTTTATGCAAAACAGCCCTTTTGATTCTTCTGCGTGTATCATTTGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTATGCAAAACAGCCCTTTTGATTCTTCTGCGTGTATCATTTGTG  942

seq1  TTGTTACTTTCATCTCGTGTTTGCTACCTAACCCGATGATTGTTCTGACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACTTTCATCTCGTGTTTGCTACCTAACCCGATGATTGTTCTGACA  992

seq1  CATGAGACATCCTGCCAACTCTGACATTACTATGTCCATCTAAGGCTCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGACATCCTGCCAACTCTGACATTACTATGTCCATCTAAGGCTCAT  1042

seq1  GTCCTTAGTTTTGGAATTC  1067
      |||||||||||||||||||
seq2  GTCCTTAGTTTTGGAATTC  1061