BAC Information

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BAC

Clone NameB6Ng01-007J11
Chromosome19 (Build37)
Map Location 28,825,232 - 28,964,770
singlet/doubletdoublet
Overlap geneEG627788, Slc1a1, LOC545262
Upstream geneLOC100042612, Rfx3, LOC666997, LOC433235, Glis3, EG434460
Downstream gene4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007J11.bB6Ng01-007J11.g
ACCDH844113DH844114
length6631,026
definitionDH844113|Mus musculus domesticus DNA, BAC clone: B6Ng01-007J11, 5' end.DH844114|Mus musculus domesticus DNA, BAC clone: B6Ng01-007J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,964,108 - 28,964,770)(28,825,232 - 28,826,268)
sequence
gaattcctcatatgtgtacaagatggcggtcacactgtcttgagcaatga
ccgcacattgatcatggatatcctatatctcccattttaactcagtgagg
tgggcattagtgacccatttttatagaggataaaactttggctcagatgt
gctgagcagcatgctggcatactatgtgctgagcagcatgccaacacact
aagtactaagtaagtggtgagctgggatcccagctccggtttgaccccaa
aggccatgttcttaggcatcatgacacatcagctctttccatgtgctcta
aaatatcagaccagcattgcacagtggtccttcctatggtgttgaaatta
tctgcatttacgttatccactgaagtagcctcaagctacatctggctatc
gaacacatgacaggtgtctaagtgacagaagcatcgaattagaattttat
acttaattgaaattaatctctattcaaataaccatatgtgaccgacggcc
atcccatgtacagacaacacagtgcaatctttacacattcccagactgtt
gagcactaagtgagcatttagccatgccaagggaacaaacttcagactca
actccattaaggaaactccttgaagcctcttctcggtgccatcacagcgg
ggggggggggggg
gaattccaatgatcaactgatacactctttcgggcttacaaagcagaagc
aagccggtgatacgtggtgatggggtccacgtttgcttatatgaaatcaa
atcactgaagggggcctatcaggccctgtagtcgccacaaatgccaggag
agacaactatcaggataggcaagccactggacatgaaaccagcctcattt
ttctgaagccagtgggcagagcacattcttcttaacacgggtttgctgtg
gggtttttccgctcttttttttttttctttaatttttcctcttttcattt
ttttttctttctttttcaagaacattctcccatctacggaagaaaggaaa
ctcattttttttttctgctgactggcttgtgcacaactggaaattatcaa
agaaatcgctgtatcgttgatgcagtcagaaaacacagaaaacaggaagc
cgatttccatctgagaatgaggcctctcagctgaatctccctttggggtt
gatgaccacgctctttccatcctggcccaaggccagttttattaaacttc
tacagcaccagcttatttttcaacctttcccaaccagagctttcctgatg
gatttctctcagtcatgtgcacggctctgagtttgccgccagcaaagagt
tccacgggaccaggaccttaccttctatgggcaatgcctggctgggattc
ttgtgatcaaaaacattaagggggtctgtggaaggagatgactcaagcgg
gtgaaatgcctgccctgccagcctaaaggatctgatttgaaactccagca
catgacatgagacttattaacaatagtggggtagagggagaagcatgtgg
gccttactgggcaatcagcatagcccaactgatggtcttcaagtttggtg
agagatcttgtctcaacatgtcatgagttaatacattgagtacaagattc
accattatttttactaggttcgttccagtatgggggagctggcagactcc
tagtcagtgctacgaagagcctctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_28964108_28964770
seq2: B6Ng01-007J11.b_43_705 (reverse)

seq1  CCCCCCCCCCCCCCCGCTGTGATGGCACCGAGAAGAGGCTTCAAGGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCCGCTGTGATGGCACCGAGAAGAGGCTTCAAGGAGTT  50

seq1  TCCTTAATGGAGTTGAGTCTGAAGTTTGTTCCCTTGGCATGGCTAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAATGGAGTTGAGTCTGAAGTTTGTTCCCTTGGCATGGCTAAATGC  100

seq1  TCACTTAGTGCTCAACAGTCTGGGAATGTGTAAAGATTGCACTGTGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAGTGCTCAACAGTCTGGGAATGTGTAAAGATTGCACTGTGTTGT  150

seq1  CTGTACATGGGATGGCCGTCGGTCACATATGGTTATTTGAATAGAGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATGGGATGGCCGTCGGTCACATATGGTTATTTGAATAGAGATTA  200

seq1  ATTTCAATTAAGTATAAAATTCTAATTCGATGCTTCTGTCACTTAGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATTAAGTATAAAATTCTAATTCGATGCTTCTGTCACTTAGACAC  250

seq1  CTGTCATGTGTTCGATAGCCAGATGTAGCTTGAGGCTACTTCAGTGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGTGTTCGATAGCCAGATGTAGCTTGAGGCTACTTCAGTGGATA  300

seq1  ACGTAAATGCAGATAATTTCAACACCATAGGAAGGACCACTGTGCAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAATGCAGATAATTTCAACACCATAGGAAGGACCACTGTGCAATGC  350

seq1  TGGTCTGATATTTTAGAGCACATGGAAAGAGCTGATGTGTCATGATGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGATATTTTAGAGCACATGGAAAGAGCTGATGTGTCATGATGCCT  400

seq1  AAGAACATGGCCTTTGGGGTCAAACCGGAGCTGGGATCCCAGCTCACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATGGCCTTTGGGGTCAAACCGGAGCTGGGATCCCAGCTCACCAC  450

seq1  TTACTTAGTACTTAGTGTGTTGGCATGCTGCTCAGCACATAGTATGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAGTACTTAGTGTGTTGGCATGCTGCTCAGCACATAGTATGCCAG  500

seq1  CATGCTGCTCAGCACATCTGAGCCAAAGTTTTATCCTCTATAAAAATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGCTCAGCACATCTGAGCCAAAGTTTTATCCTCTATAAAAATGGG  550

seq1  TCACTAATGCCCACCTCACTGAGTTAAAATGGGAGATATAGGATATCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAATGCCCACCTCACTGAGTTAAAATGGGAGATATAGGATATCCAT  600

seq1  GATCAATGTGCGGTCATTGCTCAAGACAGTGTGACCGCCATCTTGTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATGTGCGGTCATTGCTCAAGACAGTGTGACCGCCATCTTGTACAC  650

seq1  ATATGAGGAATTC  663
      |||||||||||||
seq2  ATATGAGGAATTC  663

seq1: chr19_28825232_28826268
seq2: B6Ng01-007J11.g_66_1091

seq1  GAATTCCAATGATCAACTGATACACTCTTTCGGGCTTACAAAGCAGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGATCAACTGATACACTCTTTCGGGCTTACAAAGCAGAAGC  50

seq1  AAGCCGGTGATACGTGGTGATGGGGTCCACGTTTGCTTATATGAAATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGGTGATACGTGGTGATGGGGTCCACGTTTGCTTATATGAAATCAA  100

seq1  ATCACTGAAGGGGGCCTATCAGGCCCTGTAGTCGCCACAAATGCCAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGAAGGGGGCCTATCAGGCCCTGTAGTCGCCACAAATGCCAGGAG  150

seq1  AGACAACTATCAGGATAGGCAAGCCACTGGACATGAAACCAGCCTCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTATCAGGATAGGCAAGCCACTGGACATGAAACCAGCCTCATTT  200

seq1  TTCTGAAGCCAGTGGGCAGAGCACATTCTTCTTAACACGGGTTTGCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGCCAGTGGGCAGAGCACATTCTTCTTAACACGGGTTTGCTGTG  250

seq1  GGGTTTTTCCGCTCTTTTTTTTTTTTCTTTAATTTTTCCTCTTTTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTCCGCTCTTTTTTTTTTTTCTTTAATTTTTCCTCTTTTCATTT  300

seq1  TTTTTTCTTTCTTTTTCAAGAACATTCTCCCATCTACGGAAGAAAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTCTTTTTCAAGAACATTCTCCCATCTACGGAAGAAAGGAAA  350

seq1  CTCATTTTTTTTTTCTGCTGACTGGCTTGTGCACAACTGGAAATTATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTTTTTTTCTGCTGACTGGCTTGTGCACAACTGGAAATTATCAA  400

seq1  AGAAATCGCTGTATCGTTGATGCAGTCAGAAAACACAGAAAACAGGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCGCTGTATCGTTGATGCAGTCAGAAAACACAGAAAACAGGAAGC  450

seq1  CGATTTCCATCTGAGAATGAGGCCTCTCAGCTGAATCTCCCTTTGGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTCCATCTGAGAATGAGGCCTCTCAGCTGAATCTCCCTTTGGGGTT  500

seq1  GATGACCACGCTCTTTCCATCCTGGCCCAAGGCCAGTTTTATTAAACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCACGCTCTTTCCATCCTGGCCCAAGGCCAGTTTTATTAAACTTC  550

seq1  TACAGCACCAGCTTATTTTTCAACCTTTCCCAACCAGAGCTTTCCTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCACCAGCTTATTTTTCAACCTTTCCCAACCAGAGCTTTCCTGATG  600

seq1  GATTTCTCTCAGTCATGTGCACGGCTCTGAGTTTGCCGCCAGCAAAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCTCAGTCATGTGCACGGCTCTGAGTTTGCCGCCAGCAAAGAGT  650

seq1  TCCACGGGACCAGGACCTTACCTTCTATGGGCAATGCCTGGCTGGGATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGGGACCAGGACCTTACCTTCTATGGGCAATGCCTGGCTGGGATTC  700

seq1  TTGTGATCAAAAACATT-AGGGGGTCTGTGGAAGGAGATGACTCAAGC-G  748
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  TTGTGATCAAAAACATTAAGGGGGTCTGTGGAAGGAGATGACTCAAGCGG  750

seq1  GTGAAATGCCTGCCCTGCCAGCCT-AAGGATCTGATTTGAAACTCCAGCA  797
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGAAATGCCTGCCCTGCCAGCCTAAAGGATCTGATTTGAAACTCCAGCA  800

seq1  CCATGACATGAGAC-TATTAACAATAGTGGGCTAGAGGGAGAAGCATGTG  846
       ||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  -CATGACATGAGACTTATTAACAATAGTGGGGTAGAGGGAGAAGCATGTG  849

seq1  GGCCTTACTGGGCAATCAGCATAGCCCAACTGATGGTCTCCAAGTTTGGT  896
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGCCTTACTGGGCAATCAGCATAGCCCAACTGATGGTCTTCAAGTTTGGT  899

seq1  GAGAGATCTTGTCTCAAACAATGTCATGAAGGTTAATACATTGAGTTACA  946
      |||||||||||||||||   |||||||||  |||||||||||||| ||| 
seq2  GAGAGATCTTGTCTCAA--CATGTCATGA--GTTAATACATTGAG-TAC-  943

seq1  AAGATTCACCATTATTTTTACTAGGGTCTGTTCCAAGTTATGGGGGAGCA  996
      ||||||||||||||||||||||||| || ||||||   ||||||||||| 
seq2  AAGATTCACCATTATTTTTACTAGGTTC-GTTCCA--GTATGGGGGAGC-  989

seq1  TGGCAGGACTCCTAGTCCAGTGCTACAGAAGAGCCTTCTGG  1037
      ||||| |||||||||| ||||||||| |||||||| |||||
seq2  TGGCA-GACTCCTAGT-CAGTGCTAC-GAAGAGCC-TCTGG  1026