BAC Information

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BAC

Clone NameB6Ng01-007M16
Chromosome19 (Build37)
Map Location 42,183,345 - 42,391,720
singlet/doubletdoublet
Overlap genePi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1
Upstream geneTll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055
Downstream geneD19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291, EG627624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007M16.bB6Ng01-007M16.g
ACCDH844256DH844257
length559693
definitionDH844256|Mus musculus domesticus DNA, BAC clone: B6Ng01-007M16, 5' end.DH844257|Mus musculus domesticus DNA, BAC clone: B6Ng01-007M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,183,345 - 42,183,909)(42,391,030 - 42,391,720)
sequence
caggtcaaccaaggctacacagagaaactgtcttgaaaaaccaaataaac
aaacaaataacaggcagaactttgtctctgtttaattactatactgtgat
gttttttaaatggtgtcctatagaatgctattcaagtgtcatataaccaa
attgtctcatggaaaaagtagtttttgttttgttttgttttggaacaaga
tctcactatgcagagcaggactcaaactcagagatctgtctgcctcttcc
tcctgagtgctgggactaaaggtgtcccatatctgttttgtttaatggtc
atgaacatagtttttattacattgacttatttatggaggtggagggagtc
atgtctgccatggccccacatataaggtaagaggacagttcaggagtcag
ttctcatattctactttgtgggtcctggggattgaatttaggtgataagg
tgttcttacctgctgaaccatctcagttaaagatgtattgcctctttatc
cctaagtatttcctaaatacaaggatattctcttatgtaacagtagtaga
actataaaa
gaattcaggaggctggagcatgaagggggcattgttcacgctggctgggc
tggcacagaacccaggagggataggaggggcgcaagcaaagacagctgag
gagcagagatgcgatgggagccccagccaactgtgctggccgtgctggaa
ggatagggcaacccaaggcgggggcagcagcttctgtggagggatggagg
aggccggggcagctggcatacccagaggacacataagagcagttctgcag
acttccagaagctatttggctggcaagaaccaatttggcctaccaagtta
ctgttctgtctgcctgccttccccagccccccaacattatcctgcaaccc
ccacttgtcactcggttaatgacacatggacatctggctgggaaatgacc
ccagagtgctcccttgagccctaggaatgaaccccaaatgtaagggccac
tatgctgagcccagcccaatggccaagactctgggcaggtggctagcgct
cattgccagaatagtgcaaggaaggggtctgggaagccaggagggacaag
caaggcctaagcaggctgggagtgagaagctagcagtggctagatgtgct
tcacggaaattgatgcttctgcagccagccactgagcttcccattttttt
ttttgagggcagccaccatgactgggtgggaggacctcccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_42183345_42183909
seq2: B6Ng01-007M16.b_35_599

seq1  GAATTCCAGGTCAACCAAGGCTACACAGAGAAACTGTCTTGAAAAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAACCAAGGCTACACAGAGAAACTGTCTTGAAAAACCAA  50

seq1  ATAAACAAACAAATAACAGGCAGAACTTTGTCTCTGTTTAATTACTATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAACAAATAACAGGCAGAACTTTGTCTCTGTTTAATTACTATAC  100

seq1  TGTGATGTTTTTTAAATGGTGTCCTATAGAATGCTATTCAAGTGTCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTTTTTTAAATGGTGTCCTATAGAATGCTATTCAAGTGTCATAT  150

seq1  AACCAAATTGTCTCATGGAAAAAGTAGTTTTTGTTTTGTTTTGTTTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATTGTCTCATGGAAAAAGTAGTTTTTGTTTTGTTTTGTTTTGGA  200

seq1  ACAAGATCTCACTATGCAGAGCAGGACTCAAACTCAGAGATCTGTCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATCTCACTATGCAGAGCAGGACTCAAACTCAGAGATCTGTCTGCC  250

seq1  TCTTCCTCCTGAGTGCTGGGACTAAAGGTGTCCCATATCTGTTTTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCTGAGTGCTGGGACTAAAGGTGTCCCATATCTGTTTTGTTTA  300

seq1  ATGGTCATGAACATAGTTTTTATTACATTGACTTATTTATGGAGGTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCATGAACATAGTTTTTATTACATTGACTTATTTATGGAGGTGGAG  350

seq1  GGAGTCATGTCTGCCATGGCCCCACATATAAGGTAAGAGGACAGTTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCATGTCTGCCATGGCCCCACATATAAGGTAAGAGGACAGTTCAGG  400

seq1  AGTCAGTTCTCATATTCTACTTTGTGGGTCCTGGGGATTGAATTTAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTCTCATATTCTACTTTGTGGGTCCTGGGGATTGAATTTAGGTG  450

seq1  ATAAGGTGTTCTTACCTGCTGAACCATCTCAGTTAAAGATGTATTGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTGTTCTTACCTGCTGAACCATCTCAGTTAAAGATGTATTGCCTC  500

seq1  TTTATCCCTAAGTATTTCCTAAATACAAGGATATTCTCTTATGTAACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCCTAAGTATTTCCTAAATACAAGGATATTCTCTTATGTAACAGT  550

seq1  AGTAGAACTATAAAA  565
      |||||||||||||||
seq2  AGTAGAACTATAAAA  565

seq1: chr19_42391030_42391720
seq2: B6Ng01-007M16.g_68_760 (reverse)

seq1  AATGGGAGGTCCTCCCACCCAGTCCTGGTGGCTGCCCTC-AAAAAAAAAA  49
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  AATGGGAGGTCCTCCCACCCAGTCATGGTGGCTGCCCTCAAAAAAAAAAA  50

seq1  TGGG-AGCTCTGTGGCTTGGCTGCAGAAGCCTC-AGTTCCCTGAAGCACA  97
      |||| ||||| ||||| ||||||||||||| || | |||| |||||||||
seq2  TGGGAAGCTCAGTGGC-TGGCTGCAGAAGCATCAATTTCCGTGAAGCACA  99

seq1  TCTGGCCACTGCTTGCTTCTCCCTCCCAGCCTGCTTAGGCCTTGCTTGTC  147
      ||| ||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  TCTAGCCACTGCTAGCTTCTCACTCCCAGCCTGCTTAGGCCTTGCTTGTC  149

seq1  CCTCCTGGCTTCCCAGACCCCTTCCTTGCACTATTCTGGCAATGAGCGCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGCTTCCCAGACCCCTTCCTTGCACTATTCTGGCAATGAGCGCT  199

seq1  GGCCACCTGCCCAGAGTCTTGGCCATTGGGCTGGGCTCAGCATAGTGGCC  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTGCCCAGAGTCTTGGCCATTGGGCTGGGCTCAGCATAGTGGCC  249

seq1  CTTACATTTGGGGTTCATTCCTAGGGCTCAAGGGAGCACTCTGGGGTCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTTGGGGTTCATTCCTAGGGCTCAAGGGAGCACTCTGGGGTCAT  299

seq1  TTCCCAGCCAGATGTCCATGTGTCATTAACCGAGTGACAAGTGGGGGTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCCAGATGTCCATGTGTCATTAACCGAGTGACAAGTGGGGGTTG  349

seq1  CAGGATAATGTTGGGGGGCTGGGGAAGGCAGGCAGACAGAACAGTAACTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAATGTTGGGGGGCTGGGGAAGGCAGGCAGACAGAACAGTAACTT  399

seq1  GGTAGGCCAAATTGGTTCTTGCCAGCCAAATAGCTTCTGGAAGTCTGCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCCAAATTGGTTCTTGCCAGCCAAATAGCTTCTGGAAGTCTGCAG  449

seq1  AACTGCTCTTATGTGTCCTCTGGGTATGCCAGCTGCCCCGGCCTCCTCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCTTATGTGTCCTCTGGGTATGCCAGCTGCCCCGGCCTCCTCCA  499

seq1  TCCCTCCACAGAAGCTGCTGCCCCCGCCTTGGGTTGCCCTATCCTTCCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCACAGAAGCTGCTGCCCCCGCCTTGGGTTGCCCTATCCTTCCAG  549

seq1  CACGGCCAGCACAGTTGGCTGGGGCTCCCATCGCATCTCTGCTCCTCAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCCAGCACAGTTGGCTGGGGCTCCCATCGCATCTCTGCTCCTCAGC  599

seq1  TGTCTTTGCTTGCGCCCCTCCTATCCCTCCTGGGTTCTGTGCCAGCCCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGCTTGCGCCCCTCCTATCCCTCCTGGGTTCTGTGCCAGCCCAG  649

seq1  CCAGCGTGAACAATGCCCCCTTCATGCTCCAGCCTCCTGAATTC  691
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGTGAACAATGCCCCCTTCATGCTCCAGCCTCCTGAATTC  693